dr. M.S. (Matthijs) Berends
4e9ccb4435
(v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening
2020-10-19 17:09:19 +02:00
dr. M.S. (Matthijs) Berends
28e77680c5
(v1.4.0) matching score update
2020-10-08 11:16:03 +02:00
dr. M.S. (Matthijs) Berends
4e0374af29
(v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup
2020-09-29 23:35:46 +02:00
dr. M.S. (Matthijs) Berends
1b65d76cfb
(v1.2.0.9037) survey on website
2020-07-28 18:39:57 +02:00
dr. M.S. (Matthijs) Berends
76fc8e1b14
(v1.2.0.9026) move to github
2020-07-08 14:48:06 +02:00
dr. M.S. (Matthijs) Berends
e467cc103e
(v1.1.0.9017) as.ab() update, added ab_url()
2020-05-22 20:15:19 +02:00
dr. M.S. (Matthijs) Berends
f68d71a5e0
(v1.1.0.9007) lose dependencies
2020-05-16 21:40:50 +02:00
dr. M.S. (Matthijs) Berends
7f3da74b17
(v1.1.0.9004) lose dependencies
2020-05-16 13:05:47 +02:00
dr. M.S. (Matthijs) Berends
5e2b294351
(v0.9.0.9026) update documentation
2020-02-17 14:38:01 +01:00
dr. M.S. (Matthijs) Berends
ced1a7b7fa
(v0.9.0.9008) Happy new year! Add lifecycles
2020-01-05 17:22:09 +01:00
dr. M.S. (Matthijs) Berends
c5f00f4a9f
(v0.8.0.9036) complete documentation rewrite
2019-11-28 22:32:17 +01:00
dr. M.S. (Matthijs) Berends
248638ad91
(v0.7.1.9065) bug-drug fix
2019-08-27 22:41:09 +02:00
dr. M.S. (Matthijs) Berends
93be16484b
(v0.7.1.9063) septic_patients -> example_isolates
2019-08-27 16:45:42 +02:00
dr. M.S. (Matthijs) Berends
920212e815
(v0.7.1.9056) mo and ab subsetting
2019-08-14 14:57:06 +02:00
dr. M.S. (Matthijs) Berends
8f674e19bb
(v0.7.0.9005) ab algorithm update
2019-06-11 14:18:25 +02:00
dr. M.S. (Matthijs) Berends
493ae2ba0c
(v0.6.1.9044) first_isolate fix for species
2019-05-31 14:25:11 +02:00
dr. M.S. (Matthijs) Berends
bbf8b611e3
doc fix
2019-05-23 17:35:58 +02:00
dr. M.S. (Matthijs) Berends
60983a1640
added mdr_tb()
2019-05-23 16:58:59 +02:00
dr. M.S. (Matthijs) Berends
68cc7ef0d0
new antibiotics
2019-05-10 16:44:59 +02:00
dr. M.S. (Matthijs) Berends
461eec9bac
cfta streptococci, codecov.yml
2019-04-09 14:59:17 +02:00
dr. M.S. (Matthijs) Berends
68a9a35ed6
algorithm update
2019-02-21 18:55:52 +01:00
dr. M.S. (Matthijs) Berends
3efb54d016
freq update
2019-01-29 20:20:09 +01:00
dr. M.S. (Matthijs) Berends
641d866db2
guess_ab_col, benchmarks
2019-01-11 20:37:23 +01:00
dr. M.S. (Matthijs) Berends
80ea555663
guess_ab
2019-01-03 23:56:19 +01:00
dr. M.S. (Matthijs) Berends
6b2d464f8c
big website update, licence txt update
2019-01-02 23:24:07 +01:00
dr. M.S. (Matthijs) Berends
0b8084871d
dplyr 0.8.0 support, fixes #7
2018-12-22 22:39:34 +01:00
dr. M.S. (Matthijs) Berends
e601fd259a
test syntax fix
2018-11-01 20:50:10 +01:00
dr. M.S. (Matthijs) Berends
7997de6a6d
mdro and 1st isolate improvements
2018-10-23 11:15:05 +02:00
dr. M.S. (Matthijs) Berends
5965d3c794
replaced bactid by mo
2018-08-31 13:36:19 +02:00
dr. M.S. (Matthijs) Berends
d9e204031d
update to septic_patients, speed improvements
2018-07-25 14:17:04 +02:00
dr. M.S. (Matthijs) Berends
8421638b60
new class bactid
2018-07-23 14:14:03 +02:00
dr. M.S. (Matthijs) Berends
40de1b4ac2
man
2018-07-23 10:37:49 +02:00
dr. M.S. (Matthijs) Berends
9920ac8a5c
fix for keyab, more examples
2018-07-23 10:35:39 +02:00
dr. M.S. (Matthijs) Berends
ad662d7bab
new col names for `key_antibiotics`
2018-07-19 15:11:23 +02:00
dr. M.S. (Matthijs) Berends
2a4d759fbc
check fails
2018-07-17 14:48:11 +02:00
dr. M.S. (Matthijs) Berends
5cb9c541f8
new algorithm key abs
2018-07-17 13:02:05 +02:00
dr. M.S. (Matthijs) Berends
0a5898b17d
fix for printing tibbles, improve guess_bactid
2018-06-08 12:06:54 +02:00
dcc26dd942
Update freq function
2018-05-22 16:34:22 +02:00
dr. M.S. (Matthijs) Berends
53464ff1c8
- For functions `first_isolate`, `EUCAST_rules` the antibiotic column names are case-insensitive
...
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
dr. M.S. (Matthijs) Berends
dd2517ecb7
- Added new algorithm to determine weighted isolates, can now be `points` or `keyantibiotics, see `?first_isolate`
...
- Function `first_isolate` supports tidyverse-like evaluation of parameters (no need to quote them anymore)
- Functions `as.rsi` and `as.mic` now add the package name and version as attribute
2018-03-19 20:39:23 +01:00
dr. M.S. (Matthijs) Berends
502a44eb25
- Added new function `guess_bactid` to determine the ID of a microorganism based on genus/species
...
- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
2018-03-19 12:43:22 +01:00
dr. M.S. (Matthijs) Berends
d36a391747
export first_isolate
2018-02-26 12:15:52 +01:00
dr. M.S. (Matthijs) Berends
d8da8daf9a
First CRAN submission edits
2018-02-22 20:48:48 +01:00
dr. M.S. (Matthijs) Berends
62304dc23f
first commit
2018-02-21 11:52:31 +01:00
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