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mirror of https://github.com/msberends/AMR.git synced 2025-04-19 07:53:54 +02:00

1122 Commits

Author SHA1 Message Date
969a42cc8c
(v2.1.1.9226) update intrinsic_resistant, unit test fixes 2025-03-27 15:20:22 +01:00
e6f88241b2
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex 2025-03-26 17:19:17 +01:00
8deaf2c8eb
(v2.1.1.9224) skip tests on cran 2025-03-20 23:29:21 +01:00
bb110646db
(v2.1.1.9223) allow + ab 2025-03-20 22:56:32 +01:00
d147d6602d
(v2.1.1.9222) python bump 2025-03-20 22:02:44 +01:00
43660f2b18
(v2.1.1.9221) allow combined numeric MIC values 2025-03-20 21:47:45 +01:00
79f56ad8a4
(v2.1.1.9220) unit test 2025-03-19 16:13:43 +01:00
755e6f43b7
(v2.1.1.9219) unit tests 2025-03-19 16:06:23 +01:00
287e361a54
(v2.1.1.9218) Fix unit tests 2025-03-19 16:05:24 +01:00
4dc4398ad1
(v2.1.1.9217) allow + in amr selectors 2025-03-18 16:35:22 +01:00
8d8444c607
(v2.1.1.9216) PyPI access token 2025-03-17 08:56:27 +01:00
1f35ff2b0b
(v2.1.1.9215) python token 2025-03-16 18:50:37 +01:00
a092eb3ce3
(v2.1.1.9214) aaaaaand another attempt 2025-03-16 14:03:40 +01:00
c614d66495
(v2.1.1.9213) snapshots 2025-03-16 13:41:08 +01:00
7a39439fa9
(v2.1.1.9212) unit tests 2025-03-16 13:25:54 +01:00
98bc83da73
(v2.1.1.9211) fix python wrapper 2025-03-16 13:11:26 +01:00
ceb3e6675d
(v2.1.1.9210) unit tsts 2025-03-15 20:58:05 +01:00
5c11b924de
(v2.1.1.9209) unit tests 2025-03-15 20:46:33 +01:00
6bdc798734
(v2.1.1.9208) unit tests 2025-03-15 20:30:29 +01:00
d717bd3f87
(v2.1.1.9207) fix PythonPackage 2025-03-15 16:19:03 +01:00
7631e82ae6
(v2.1.1.9206) update precommit hook 2025-03-15 16:17:27 +01:00
ede1cdfd99
(v2.1.1.9205) Fix python wrapper 2025-03-15 16:14:29 +01:00
afb97ad38f
(v2.1.1.9204) move python package to separate branch 2025-03-15 16:02:57 +01:00
7f1ae1f474
(v2.1.1.9203) unit tests 2025-03-15 13:25:23 +01:00
f758ab60f3
run MICs and disks if detected 2025-03-14 17:23:24 +01:00
6cc273bbc7
(v2.1.1.9201) oops 2025-03-14 17:12:12 +01:00
72f2e723fb
(v2.1.1.9200) new argument capped_mic_handling, add Search to website 2025-03-14 17:01:50 +01:00
58d7aa8790
(v2.1.1.9199) fix eucast 2025-03-14 13:43:22 +01:00
e134e01418
(v2.1.1.9198) support eucast expert rules 14 and 13.1 2025-03-14 10:10:35 +01:00
eafe9bd113
(v2.1.1.9197) Final fixes for vetmed 2025-03-13 15:51:58 +01:00
861331b1df
(v2.1.1.9196) fix eucast, unit tests 2025-03-13 15:38:39 +01:00
9aab129ea6
(v2.1.1.9195) add BTL-S, fix ranks in unknown microorganisms 2025-03-13 14:30:14 +01:00
a7ef22a21e
(v2.1.1.9194) new argument for missing R breakpoints - updated from WHONET 2025-03-12 16:24:38 +01:00
e1b7252ff6
(v2.1.1.9193) new antimicrobials for screening 2025-03-12 15:09:28 +01:00
067a8aca66
(v2.1.1.9192) fix fluoroquinolones and add bleomycin 2025-03-10 17:04:35 +01:00
32024e597a
(v2.1.1.9191) unit tests 2025-03-10 12:16:45 +01:00
a2c2be23c1
(v2.1.1.9190) antibiotics deprecation in antibiogram() 2025-03-09 10:41:11 +01:00
c7af397edf
(v2.1.1.9189) Add the awesome Aislinn Cook 2025-03-07 23:25:50 +01:00
245483e41c
(v2.1.1.9188) fix antibiogram plot 2025-03-07 23:01:25 +01:00
b67613ce08
(v2.1.1.9187) WISCA fix 2025-03-07 22:27:21 +01:00
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials! 2025-03-07 20:43:26 +01:00
e28dd86c43
(v2.1.1.9183) unit test for older R versions 2025-03-03 14:54:42 +01:00
9a9468fa84
(v2.1.1.9182) fix AMR selectors for tidymodels, add unit tests 2025-03-03 12:59:27 +01:00
07efc292bc
(v2.1.1.9163) cleanup 2025-02-27 14:04:29 +01:00
22e66741cc
(v2.1.1.9160) cleanup 2025-02-26 20:28:33 +01:00
0c3ea4b538
(v2.1.1.9159) new approach as.ab() 2025-02-26 19:23:54 +01:00
122bca0f95
(v2.1.1.9158) updated as.ab 2025-02-26 13:32:16 +01:00
195dfb4b91
(v2.1.1.9157) improved as.ab(), fixed knit_print of antibiogram 2025-02-26 13:27:20 +01:00
b10989f431
(v2.1.1.9156) fix for knitr in WISCA 2025-02-23 19:18:42 +01:00
aa8f6af185
(v2.1.1.9155) new mic_p50() and mic_p90() - updated AMR intro 2025-02-23 11:18:08 +01:00