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ab2b359e6b
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(v1.2.0.9036) unit test fix
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2020-07-22 12:29:51 +02:00 |
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09fba38ea6
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(v1.2.0.9035) as.mo() speed improvement
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2020-07-22 10:24:23 +02:00 |
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6ab468362d
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(v1.2.0.9034) code cleaning
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2020-07-13 09:17:24 +02:00 |
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c0cf7ab02b
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(v1.2.0.9033) speed improvement mdro(), filter_ab_class()
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2020-07-12 11:43:31 +02:00 |
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1d66b5c43c
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(v1.2.0.9032) Permanently move to GitHub
|
2020-07-09 20:07:39 +02:00 |
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a438dcc884
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(v1.2.0.9031) GitHub Actions
|
2020-07-09 16:11:56 +02:00 |
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7baa9d3658
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(v1.2.0.9030) GitHub Actions
|
2020-07-09 14:12:11 +02:00 |
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cf3c3ee8f7
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(v1.2.0.9029) GitHub actions
|
2020-07-08 22:55:17 +02:00 |
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d39d32448b
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(v1.2.0.9028) GitHub actions
|
2020-07-08 20:43:25 +02:00 |
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5195e0b9da
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(v1.2.0.9027) move to github
|
2020-07-08 17:48:57 +02:00 |
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76fc8e1b14
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(v1.2.0.9026) move to github
|
2020-07-08 14:48:06 +02:00 |
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2134fc76e2
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(v1.2.0.9025) AMR calculation speed improvement
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2020-07-03 12:14:41 +02:00 |
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46cf423eab
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(v1.2.0.9024) AMR calculation speed improvement
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2020-07-03 10:51:55 +02:00 |
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152ac5bcad
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(v1.2.0.9023) ab_from_text() improvement
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2020-07-02 21:12:52 +02:00 |
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298e67a45b
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(v1.2.0.9022) as.ab() improvement
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2020-07-01 16:21:36 +02:00 |
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afc660dc33
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(v1.2.0.9021) only progressbar in interactive sessions
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2020-07-01 11:51:26 +02:00 |
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cc6ce0a938
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(v1.2.0.9020) ab_from_text() improvement
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2020-07-01 11:23:05 +02:00 |
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329a0eb0b6
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(v1.2.0.9019) ab_from_text() dose and administration
|
2020-07-01 11:07:01 +02:00 |
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240d817b4e
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(v1.2.0.9018) ab_from_text() improvement
|
2020-06-26 13:15:46 +02:00 |
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4f6f056077
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(v1.2.0.9017) ab_from_text() improvement
|
2020-06-26 12:31:27 +02:00 |
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b31003c0b6
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(v1.2.0.9016) fix in rsi_calc()
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2020-06-26 10:21:22 +02:00 |
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033ca49817
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(v1.2.0.9015) ab_from_text()
|
2020-06-25 19:20:50 +02:00 |
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344bbd57f4
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(v1.2.0.9014) ab_from_text()
|
2020-06-25 17:34:50 +02:00 |
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8a66e475d7
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(v1.2.0.9013) unit test fix
|
2020-06-22 13:18:40 +02:00 |
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779a4e8348
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(v1.2.0.9012) mo_domain(), improved error handling
|
2020-06-22 12:18:53 +02:00 |
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93a158aebd
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(v1.2.0.9011) mo_domain(), improved error handling
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2020-06-22 11:18:40 +02:00 |
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e88d7853f5
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(v1.2.0.9010) documentation fix
|
2020-06-17 21:35:10 +02:00 |
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f18389d5d6
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(v1.2.0.9009) pkg dependency fix
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2020-06-17 16:29:10 +02:00 |
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ac12392da3
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(v1.2.0.9008) ab_class improvement
|
2020-06-17 15:14:37 +02:00 |
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c4d7412f36
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(v1.2.0.9007) Tidyverse selections
|
2020-06-17 01:39:30 +02:00 |
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4f94e1312f
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(v1.2.0.9006) improve auto col-determination
|
2020-06-11 20:03:13 +02:00 |
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352508889c
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(v1.2.0.9005) data set fix
|
2020-06-09 16:31:44 +02:00 |
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8b692ecfcf
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(v1.2.0.9004) rsi_df() fix for groups
|
2020-06-09 16:18:03 +02:00 |
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40221e5244
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(v1.2.0.9003) better terminal colour support
|
2020-06-05 13:56:05 +02:00 |
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2c8d600914
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(v1.2.0.9002) fix for joins
|
2020-06-03 14:33:55 +02:00 |
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5dc4c96b7d
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(v1.2.0.9001) filter_ab_class() update
|
2020-06-03 11:48:00 +02:00 |
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02d07b9fb3
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(v1.2.0.9000) eucast_rules() fix for tibbles
|
2020-06-02 16:05:56 +02:00 |
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b44e2c9202
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v1.2.0
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2020-05-28 16:48:55 +02:00 |
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d9a4b0bcaf
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(v1.1.0.9021) 1st isolates update
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2020-05-28 10:51:56 +02:00 |
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86d44054f0
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(v1.1.0.9020) updated taxonomy
|
2020-05-27 16:37:49 +02:00 |
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ae1969b941
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(v1.1.0.9019) mo_source fix
|
2020-05-25 01:01:14 +02:00 |
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f5ff2e6634
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(v1.1.0.9018) as.ab() update, added ab_url()
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2020-05-22 20:29:55 +02:00 |
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e467cc103e
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(v1.1.0.9017) as.ab() update, added ab_url()
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2020-05-22 20:15:19 +02:00 |
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1b1e243d14
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(v1.1.0.9016) small fix
|
2020-05-21 12:28:57 +02:00 |
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743f9a5364
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(v1.1.0.9015) new default eucast_rules
|
2020-05-20 12:00:17 +02:00 |
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5216d2b520
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(v1.1.0.9014) lose dependencies
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2020-05-19 14:16:45 +02:00 |
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cb1814f5ff
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(v1.1.0.9013) lose dependencies
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2020-05-19 13:18:01 +02:00 |
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19703eb5d3
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(v1.1.0.9012) lose dependencies
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2020-05-19 12:08:49 +02:00 |
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218fd08097
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(v1.1.0.9011) lose dependencies
|
2020-05-18 13:59:34 +02:00 |
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d659c9baef
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(v1.1.0.9010) lose dependencies
|
2020-05-18 11:09:02 +02:00 |
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bf0402a653
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(v1.1.0.9009) lose dependencies
|
2020-05-18 10:30:53 +02:00 |
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29609a0e2c
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(v1.1.0.9006) lose dependencies
|
2020-05-16 20:42:45 +02:00 |
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9fce546901
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(v1.1.0.9003) CI fix
|
2020-05-01 09:14:32 +02:00 |
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77d8f97e0c
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(v1.1.0.9002) CI fix
|
2020-04-30 18:46:29 +02:00 |
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5bdece1f9d
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(v1.1.0.9000) CI fix
|
2020-04-30 09:05:03 +02:00 |
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b040185269
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(v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI
|
2020-04-29 14:33:44 +02:00 |
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e0f4c93e82
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v1.1.0
|
2020-04-17 19:16:30 +02:00 |
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c2ffbd9f95
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(v1.0.1.9009) prepare for next release
|
2020-04-15 11:30:28 +02:00 |
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4be54d608c
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(v1.0.1.9008) RIVM abbreviations for drugs
|
2020-04-14 20:38:09 +02:00 |
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cde65141d9
|
(v1.0.1.9007) small bugfix
|
2020-04-14 15:10:09 +02:00 |
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7a6f819232
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(v1.0.1.9006) added generic CLSI rules
|
2020-04-14 14:12:31 +02:00 |
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d1cb7d3b6f
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(v1.0.1.9005) as.mo() improvements
|
2020-04-13 21:09:56 +02:00 |
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219cff403f
|
(v1.0.1.9004) Support dplyr 1.0.0
|
2020-03-14 14:05:43 +01:00 |
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77656a676c
|
(v1.0.1.9002) PCA unit tests
|
2020-03-08 11:18:59 +01:00 |
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9fc858f208
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(v1.0.1.9001) PCA unit tests
|
2020-03-08 09:12:11 +01:00 |
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fa0d9c58d9
|
(v1.0.1.9000) first PCA implementation
|
2020-03-07 21:48:21 +01:00 |
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f444c24ed3
|
(v1.0.1) v 1.0.1
|
2020-02-23 20:56:11 +01:00 |
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0d5e78b2cf
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(v1.0.0.9007) small doc fix
|
2020-02-22 17:03:47 +01:00 |
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0595af2801
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(v1.0.0.9006) fix WARNING
|
2020-02-21 21:26:58 +01:00 |
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ea32e9916a
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(v1.0.0.9005) info printing only in interactive mode
|
2020-02-21 21:13:38 +01:00 |
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47fe8b7820
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(v1.0.0.9004) add example_isolaten_unclean
|
2020-02-21 16:05:19 +01:00 |
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bb3728f023
|
(v1.0.0.9003) prepare for short update
|
2020-02-21 13:13:34 +01:00 |
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6408911922
|
(v1.0.0.9002) fix lintr
|
2020-02-20 20:31:42 +01:00 |
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bdb26f624f
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(v1.0.0.9001) add uti to as.rsi()
|
2020-02-20 17:21:01 +01:00 |
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c6184a0fb8
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(v0.9.0.9029) add uti to as.rsi()
|
2020-02-20 13:19:23 +01:00 |
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c8981a563e
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(v0.9.0.9027) documentation fix
|
2020-02-17 15:07:25 +01:00 |
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5e2b294351
|
(v0.9.0.9026) update documentation
|
2020-02-17 14:38:01 +01:00 |
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11f00f8a0a
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(v0.9.0.9025) update as.rsi documentation
|
2020-02-16 22:43:56 +01:00 |
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c7a93af3d0
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(v0.9.0.9024) global vars fix
|
2020-02-14 20:03:43 +01:00 |
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9b8b02960e
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(v0.9.0.9023) EUCAST 2020 guidelines
|
2020-02-14 19:54:13 +01:00 |
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5a98e6b777
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(v0.9.0.9022) inheritance fix
|
2020-02-10 14:18:15 +01:00 |
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b4356a299c
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(v0.9.0.9021) inheritance fix
|
2020-02-10 12:25:02 +01:00 |
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c7a76ba713
|
(v0.9.0.9020) as.mo() improvement
|
2020-02-09 22:04:29 +01:00 |
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4e1c16c5a5
|
(v0.9.0.9019) website update
|
2020-02-01 15:09:36 +01:00 |
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1b80773c22
|
(v0.9.0.9017) documentation fix
|
2020-01-27 19:30:26 +01:00 |
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a13c62e6e8
|
(v0.9.0.9016) Support SNOMED codes
|
2020-01-27 19:14:23 +01:00 |
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42b079cdb7
|
(v0.9.0.9015) Fix for as.rsi.disk()
|
2020-01-27 11:37:00 +01:00 |
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9a3891efe4
|
(v0.9.0.9014) Machine reading guidelines
|
2020-01-27 11:05:39 +01:00 |
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423d1d3c41
|
(v0.9.0.9013) Support for LOINC codes
|
2020-01-26 20:38:54 +01:00 |
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449d9bde35
|
(v0.9.0.9012) Support for LOINC codes
|
2020-01-26 20:20:00 +01:00 |
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19172b1d48
|
(v0.9.0.9011) Support R 4.0
|
2020-01-15 16:40:34 +01:00 |
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895e97c310
|
(v0.9.0.9010) Support R 4.0
|
2020-01-15 15:24:08 +01:00 |
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64f5ceef03
|
(v0.9.0.9009) antibiotics data set update
|
2020-01-08 11:30:33 +01:00 |
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ced1a7b7fa
|
(v0.9.0.9008) Happy new year! Add lifecycles
|
2020-01-05 17:22:09 +01:00 |
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f4669889e5
|
(v0.9.0.9007) website update
|
2019-12-27 11:56:54 +01:00 |
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db5dfff0ca
|
(v0.9.0.9006) added CITATION file
|
2019-12-22 11:43:38 +01:00 |
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ba3ce77f02
|
(v0.9.0.9005) as.mo for G. species
|
2019-12-21 10:56:06 +01:00 |
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cc8cd043e1
|
(v0.9.0.9004) website fix
|
2019-12-20 21:06:39 +01:00 |
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2db2a2458a
|
(v0.9.0.9003) as.mo() speedup for fullnames
|
2019-12-20 15:05:58 +01:00 |
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f7eb6e4107
|
(v0.9.0.9002) website updates
|
2019-12-16 11:08:25 +01:00 |
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56ce9bf665
|
(v0.9.0) website fixes
|
2019-11-30 12:01:50 +01:00 |
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bb2ed55842
|
(v0.9.0) v0.9.0
|
2019-11-29 19:43:23 +01:00 |
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9feef53bde
|
(v0.8.0.9037) complete documentation rewrite
|
2019-11-28 23:00:37 +01:00 |
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c5f00f4a9f
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(v0.8.0.9036) complete documentation rewrite
|
2019-11-28 22:32:17 +01:00 |
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7c28b392b1
|
(v0.8.0.9035) add more mo codes
|
2019-11-24 22:48:56 +01:00 |
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e53cc4990c
|
(v0.8.0.9034) add cid to antivirals
|
2019-11-23 12:39:57 +01:00 |
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267320f15f
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(v0.8.0.9033) antivirals data set, cleanup
|
2019-11-18 12:10:47 +01:00 |
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67f3f4387b
|
(v0.8.0.9032) fix regex error
|
2019-11-15 16:50:46 +01:00 |
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09e2730b53
|
(v0.8.0.9031) as.mo() improvements
|
2019-11-15 15:25:03 +01:00 |
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248b45da71
|
(v0.8.0.9030) depend on tidyr >= 1.0.0
|
2019-11-11 10:46:39 +01:00 |
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d22834c5b8
|
(v0.8.0.9029) cleanup
|
2019-11-10 15:50:18 +01:00 |
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54b6322056
|
(v0.8.0.9028) examples fix
|
2019-11-10 13:17:20 +01:00 |
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59ededa8dc
|
(v0.8.0.9027) adding susceptibility() and resistance()
|
2019-11-10 12:16:56 +01:00 |
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228a4245cb
|
(v0.8.0.9026) appveyor fix
|
2019-11-10 09:26:25 +01:00 |
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a8c48cb2d7
|
(v0.8.0.9025) appveyor fix
|
2019-11-10 09:21:43 +01:00 |
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07f945de53
|
(v0.8.0.9024) appveyor fix
|
2019-11-10 09:04:18 +01:00 |
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e252f68cdb
|
(v0.8.0.9023) appveyor fix
|
2019-11-09 17:13:31 +01:00 |
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32e3a98967
|
(v0.8.0.9022) update vignettes
|
2019-11-09 16:37:41 +01:00 |
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ef640add2d
|
(v0.8.0.9021) update vignettes
|
2019-11-09 11:33:22 +01:00 |
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e2d05cb1b0
|
(v0.8.0.9017) keywords update
|
2019-11-06 14:43:23 +01:00 |
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be9a3e6b12
|
(v0.8.0.9016) unit test update
|
2019-11-05 23:07:05 +01:00 |
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d19c44a25f
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(v0.8.0.9015) unit test update
|
2019-11-05 22:42:00 +01:00 |
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a1fd2cd98a
|
(v0.8.0.9014) unit test update
|
2019-11-05 22:23:45 +01:00 |
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2560aa1a53
|
(v0.8.0.9013) unit test update
|
2019-11-05 21:52:58 +01:00 |
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5345d2759a
|
(v0.8.0.9012) mdro improvement
|
2019-11-05 11:28:52 +01:00 |
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fe606e287b
|
(v0.8.0.9011) col guess update
|
2019-11-04 12:08:08 +01:00 |
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9060233953
|
(v0.8.0.9010) mdro bug fix
|
2019-11-04 11:35:34 +01:00 |
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0bb531f3e0
|
(v0.8.0.9009) unit test
|
2019-11-03 22:41:29 +01:00 |
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29e448883d
|
(v0.8.0.9008) new verbose mode for MDROs
|
2019-11-03 22:24:42 +01:00 |
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09c4b04cd0
|
(v0.8.0.9007) Enterobacterales order
|
2019-10-30 23:02:50 +01:00 |
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7ff2ad8188
|
(v0.8.0.9006) small typos
|
2019-10-27 00:31:59 +02:00 |
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412077a6f2
|
(v0.8.0.9005) fix unit tests
|
2019-10-26 22:21:26 +02:00 |
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d2e8249edd
|
(v0.8.0.9004) added MDR guideline by Magiorakos et al.
|
2019-10-26 21:56:41 +02:00 |
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c01dc8a5b7
|
(v0.8.0.9003) printing fix for AB columns
|
2019-10-23 15:44:11 +02:00 |
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3e5ab53209
|
(v0.8.0.9002) eucast_rules() fix for S. maltophilia
|
2019-10-23 14:48:25 +02:00 |
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666126cd5e
|
(v0.8.0.9001) guideline text on as.rsi()
|
2019-10-21 14:12:28 +02:00 |
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1b8e2366f7
|
(v0.8.0.9000) website update
|
2019-10-16 22:47:48 +02:00 |
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10e6b225e7
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(v0.7.1.9107) v0.8.0
|
2019-10-15 14:35:23 +02:00 |
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2c0f3534bf
|
(v0.7.1.9106) v0.8.0
|
2019-10-13 09:31:58 +02:00 |
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1736fb62d6
|
(v0.7.1.9105) another try
|
2019-10-12 10:08:55 +02:00 |
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2eb4a42f3d
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(v0.7.1.9104) vignette fix
|
2019-10-12 09:15:27 +02:00 |
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b2a08d056b
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(v0.7.1.9103) add lintr to CI
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2019-10-11 19:16:49 +02:00 |
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00cdb498a0
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(v0.7.1.9102) lintr
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2019-10-11 17:21:02 +02:00 |
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c8f6b97847
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(v0.7.1.9100) bug_drug speed, MIC levels
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2019-10-08 22:21:33 +02:00 |
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5dbff3e170
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(v0.7.1.9098) mdro() unit test fix
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2019-10-07 15:12:42 +02:00 |
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f479dfce60
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(v0.7.1.9097) mdro() examples fix
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2019-10-07 14:57:27 +02:00 |
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4e9c4c1b4e
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(v0.7.1.9096) German guideline for mdro()
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2019-10-07 14:32:06 +02:00 |
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1e260d85c8
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(v0.7.1.9095) get_column_abx() fix
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2019-10-06 22:19:26 +02:00 |
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3d5692219e
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(v0.7.1.9094) get_column_abx() improvement
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2019-10-06 21:44:08 +02:00 |
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b6653a620a
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(v0.7.1.9093) as.ab() fix
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2019-10-06 21:07:38 +02:00 |
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8bc4081b03
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(v0.7.1.9092) as.ab() improvements
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2019-10-04 15:36:12 +02:00 |
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edb599ae0b
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(v0.7.1.9091) percentage from clean pkg
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2019-09-30 16:45:36 +02:00 |
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b39e7feae6
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(v0.7.1.9090) factor levels of mdr_tb
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2019-09-26 21:58:06 +02:00 |
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b9f01d686e
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(v0.7.1.9089) eucast file update
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2019-09-25 22:37:40 +02:00 |
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99d0fe76dd
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(v0.7.1.9088) bug_drug improvement
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2019-09-25 15:43:22 +02:00 |
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04cd0d25db
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(v0.7.1.9087) small fix
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2019-09-23 23:09:50 +02:00 |
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38336d7408
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(v0.7.1.9086) small fix
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2019-09-23 23:00:18 +02:00 |
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ad5f211a8f
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(v0.7.1.9085) Salmonella fix
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2019-09-23 21:24:37 +02:00 |
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76dc948067
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(v0.7.1.9084) CI fix
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2019-09-23 20:55:54 +02:00 |
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8ce252fbc5
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(v0.7.1.9083) LIS code improvement
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2019-09-23 17:32:05 +02:00 |
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a8c6b8f9c4
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(v0.7.1.9082) CI fix
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2019-09-23 14:37:24 +02:00 |
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64d9829030
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(v0.7.1.9081) bug_drug fixes
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2019-09-23 13:53:50 +02:00 |
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66d405ff57
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(v0.7.1.9080) new LIS codes
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2019-09-22 17:19:59 +02:00 |
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57b0bd92a0
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(v0.7.1.9079) small fixes
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2019-09-22 12:41:45 +02:00 |
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46b61e9a70
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(v0.7.1.9078) unit tests
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2019-09-20 14:50:02 +02:00 |
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40e6b3e8f6
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(v0.7.1.9077) mo codes fix
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2019-09-20 14:18:29 +02:00 |
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3596adb295
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(v0.7.1.9076) mo codes
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2019-09-20 12:33:05 +02:00 |
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e2aa4f996b
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(v0.7.1.9075) new microorganism codes
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2019-09-18 15:46:09 +02:00 |
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f553a08a7b
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(v0.7.1.9074) CI updates
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2019-09-16 12:00:56 +02:00 |
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cd178ee569
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(v0.7.1.9072) key_antibiotics() for foreign systems
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2019-09-12 15:08:53 +02:00 |
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b5d2a08401
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(v0.7.1.9071) p_symbol()
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2019-09-03 09:47:39 +02:00 |
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06b6266366
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(v0.7.1.9070) na.rm for age(), age_groups()
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2019-09-02 15:17:41 +02:00 |
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c7be72f0ce
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(v0.7.1.9069) documentation update
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2019-09-01 13:16:57 +02:00 |
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88ee1b7268
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(v0.7.1.9068) gramstain to freq()
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2019-08-30 14:50:56 +02:00 |
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34a82d091e
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(v0.7.1.9067) honor info
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2019-08-28 17:12:48 +02:00 |
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e2b78fa428
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(v0.7.1.9066) bug-drug fix
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2019-08-27 23:00:00 +02:00 |
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248638ad91
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(v0.7.1.9065) bug-drug fix
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2019-08-27 22:41:09 +02:00 |
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f3276592b7
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(v0.7.1.9064) bug-drug fix
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2019-08-27 19:15:04 +02:00 |
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93be16484b
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(v0.7.1.9063) septic_patients -> example_isolates
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2019-08-27 16:45:42 +02:00 |
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7a6fce4eb8
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(v0.7.1.9062) mo/ab assignment improvements
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2019-08-26 16:02:03 +02:00 |
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13d4fef801
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(v0.7.1.9061) mo_property improvement
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2019-08-26 10:03:37 +02:00 |
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e46cb0399f
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(v0.7.1.9059) bug_drug_combinations
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2019-08-25 22:53:22 +02:00 |
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7c069145ac
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(v0.7.1.9058) as.mo() improvement
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2019-08-20 11:40:54 +02:00 |
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04d49a62af
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(v0.7.1.9057) get_column_abx() improvement
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2019-08-15 17:09:27 +02:00 |
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920212e815
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(v0.7.1.9056) mo and ab subsetting
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2019-08-14 14:57:06 +02:00 |
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7108454ba5
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(v0.7.1.9055) algorithm improvements
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2019-08-13 16:15:08 +02:00 |
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5f2733349e
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(v0.7.1.9038) mo algorithm inprovements
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2019-08-12 19:07:15 +02:00 |
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c44c5e3913
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(v0.7.1.9037) CI and global env fix
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2019-08-12 15:34:49 +02:00 |
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bd252a2984
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(v0.7.1.9036) preserve ab/mo classes in subsetting
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2019-08-12 14:48:09 +02:00 |
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1d423cca89
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(v0.7.1.9035) cephalosporins and unit tests
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2019-08-11 19:07:26 +02:00 |
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3f5828e74a
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(v0.7.1.9034) mo.codes fix for Dracunculus spp.
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2019-08-09 23:45:26 +02:00 |
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6598c5615d
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(v0.7.1.9033) 5000 new fungi
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2019-08-09 23:22:10 +02:00 |
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6a349bf757
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(v0.7.1.9032) eucast_rules() improvements
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2019-08-09 14:28:46 +02:00 |
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1ce4b72dd2
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(v0.7.1.9031) include_unknown for first_isolate()
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2019-08-08 22:39:42 +02:00 |
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22a206ffd8
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(v0.7.1.9030) eucast_rules() fix
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2019-08-08 15:52:07 +02:00 |
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f67c739892
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(v0.7.1.9029) unit test
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2019-08-07 18:56:14 +02:00 |
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bfa92eb166
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(v0.7.1.9028) predict update
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2019-08-07 15:58:32 +02:00 |
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90c874025a
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(v0.7.1.9027) tibble printing
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2019-08-07 15:37:39 +02:00 |
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14c47da656
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(v0.7.1.9026) NAMESPACE fix
|
2019-08-06 15:57:51 +02:00 |
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3a1f960f89
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(v0.7.1.9024) eucast_rules() fix, new MOs
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2019-08-06 14:39:22 +02:00 |
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