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mirror of https://github.com/msberends/AMR.git synced 2024-12-25 19:26:13 +01:00
Commit Graph

92 Commits

Author SHA1 Message Date
9c566585b0 first inclusion of ITIS data 2018-09-24 23:33:29 +02:00
df5d82fff3 unit tests 2018-09-17 21:51:21 +02:00
5d80cef338 added taxonomic data from ITIS 2018-09-17 20:53:32 +02:00
7680e4edd8 add shortest and longest to freq for characters 2018-09-17 09:42:09 +02:00
db14781593 add labels_rsi_count 2018-09-16 22:11:17 +02:00
b792a2754e added prevalence column and alterted as.mo algorith to use it, added ab_name as alias 2018-09-16 16:43:29 +02:00
b0ca49d68d small improvement for is.rsi.eligible, more unit tests 2018-09-14 11:54:01 +02:00
cb0d74a4f0 support for French and Italian, added quote to freq 2018-09-10 15:45:25 +02:00
b83e6a9380 algoritm improvement, removed all Catabacter except for C. hongkongensis 2018-09-10 11:40:54 +02:00
4816419f0c AI improvements for microorganisms 2018-09-09 12:11:44 +02:00
936198372e translate CoNS 2018-09-08 16:24:12 +02:00
26f5be0033 support for portuguese, language determination based on system 2018-09-08 16:06:47 +02:00
de36b0be23 fix for empty values in mo_property 2018-09-05 12:21:27 +02:00
e39a9a8b05 added mo_shortname 2018-09-05 10:51:46 +02:00
b388e3fee7 Support for German and Spanish microorganism properties, cleanup 2018-09-04 11:33:30 +02:00
75fe4d401f new MOs, cleanup 2018-09-01 21:19:46 +02:00
5965d3c794 replaced bactid by mo 2018-08-31 13:36:19 +02:00
d9e68e0a50 ggplot_rsi example update, more unit tests 2018-08-29 16:25:57 +02:00
029157b3be 163 new trade names, added ab_tradenames 2018-08-29 12:27:37 +02:00
972fc4f6c7 ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid 2018-08-28 13:51:13 +02:00
2acdb1981c atc and bactid functions, readme update 2018-08-25 22:01:14 +02:00
460dee789f typo 2018-08-24 14:33:35 +02:00
baaf4cc3e1 few extra tests 2018-08-24 14:18:38 +02:00
a100d07da6 removed ratio, better rsi_calc, update for freq 2018-08-24 11:08:20 +02:00
febd0ca885 geom_rsi - any parameter 2018-08-23 21:27:15 +02:00
8ab93b6688 unit tests 2018-08-23 01:01:50 +02:00
da5379c881 quasiquotation, alpha for geom_rsi 2018-08-23 00:40:36 +02:00
3e87c8f409 count_* functions 2018-08-22 00:02:26 +02:00
b0995362af testthat error 2018-08-14 12:00:01 +02:00
533342583a Travis checks 2018-08-14 11:37:40 +02:00
7584c929a5 new AppVeyor environment 2018-08-14 08:57:17 +02:00
59ce1eb1b1 ggplot_rsi improvements 2018-08-13 16:42:37 +02:00
dba06c3295 abname improvement, small fixes 2018-08-13 11:00:53 +02:00
ce2cdb9309 support groups for portion_df, update README 2018-08-12 22:34:03 +02:00
e5d32cafe0 new unit tests for ggplot, small fixes 2018-08-12 17:44:06 +02:00
53fa198e35 new portion functions 2018-08-10 15:01:05 +02:00
ae2433a020 rsi family for resistance analysis 2018-08-03 14:49:29 +02:00
6262315527 Becker classification
Lancefield classification
Added Lancefield groups to `microorganisms` data set
2018-08-02 13:15:45 +02:00
edd2dd09dc rsi for freq 2018-08-01 22:37:28 +02:00
d8f70a74de clipboard error 2018-08-01 10:32:24 +02:00
510e8f22aa more unit tests 2018-07-30 00:57:49 +02:00
d0a115d995 bactid speed improvement 2018-07-30 00:14:06 +02:00
826694323b new functions R, RI, SI, S 2018-07-29 22:14:51 +02:00
feab1cad6b small fixes 2018-07-28 09:34:03 +02:00
498e88b5cf improvement for forecasting resistance 2018-07-26 16:30:42 +02:00
d9e204031d update to septic_patients, speed improvements 2018-07-25 14:17:04 +02:00
8421638b60 new class bactid 2018-07-23 14:14:03 +02:00
9920ac8a5c fix for keyab, more examples 2018-07-23 10:35:39 +02:00
0d64c166f0 keyab fixes 2018-07-17 19:51:09 +02:00
5cb9c541f8 new algorithm key abs 2018-07-17 13:02:05 +02:00