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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 10:06:12 +01:00
Commit Graph

166 Commits

Author SHA1 Message Date
a4cd38c433 fix for R < 3.2, expect_warning() on hold 2023-02-14 10:41:01 +01:00
45a9697c84 unit tests 2023-02-12 17:10:48 +01:00
c740967cf2 fix for binding rows 2023-02-12 11:20:14 +01:00
c51fb24363 pm_bind_rows 2023-02-11 22:28:48 +01:00
b146de6d7f fix for bind_rows2, added 4 langs 2023-02-11 21:57:12 +01:00
2007c3eef3 bind_rows 2023-02-10 17:09:48 +01:00
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
4b133d4c96 unit tests 2023-01-30 17:24:03 +01:00
19fd0ef121 sort sir history 2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
b94bc6c67b adding mo fixes 2023-01-14 19:50:25 +01:00
84ed8c32bb documentation 2023-01-06 19:21:04 +01:00
a0ee86536a unit tests 2023-01-05 14:43:18 +01:00
e4ea96cbf9 fix for R < 3.4 2022-12-30 12:57:27 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
31fb81c382 revised as.rsi(), fix for mdro() 2022-11-24 20:29:00 +01:00
f6862a139d expert rules 12.0 2022-11-14 15:20:39 +01:00
d20caae54b cleanup 2022-10-31 13:25:41 +01:00
9444ed6d1d fix antibiotics error 2022-10-30 21:05:46 +01:00
d40e0ef20b completely updated antibiotics 2022-10-30 14:31:45 +01:00
c2801ba7a1 new rsi_translation 2022-10-22 22:00:15 +02:00
4bebba3610 fix for scoped dplyr verbs 2022-10-21 15:13:19 +02:00
aa2c0639d0 add confidence intervals (fixed #70), remove combine_IR 2022-10-20 16:08:01 +02:00
85e2fbe4a3 remove warnings from unit tests 2022-10-19 11:47:57 +02:00
Dr. Matthijs Berends
85ed7ea5f0
more robust install check 2022-10-14 15:45:20 +02:00
76bcd3528c move object assignment to AMR_env 2022-10-14 13:02:50 +02:00
b9342d103e fix documentation 2022-10-06 11:33:30 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
63fe160322 new rsi_interpretation_history 2022-09-01 15:20:57 +02:00
c44ddf272f fix for R <= 3.3 2022-08-28 19:34:04 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
3864ab2fb8 Feather and Parquet files 2022-08-26 22:25:15 +02:00
4754848e96 (v1.8.1.9001) update unit tests, fixes #53 2022-04-08 11:02:45 +02:00
3b2b2be5f8 (v1.8.0.9002) as.rsi() cleanup, more informative warnings 2022-03-02 15:38:55 +01:00
25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
578e7dfee9 (v1.7.1.9070) Better WHONET support 2021-12-13 10:18:28 +01:00
e0a2634f14 (v1.7.1.9065) unit tests 2021-12-11 15:13:44 +01:00
77ba4318ea (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00
e18c49ed93 (v1.7.1.9063) not_intrinsic_resistant 2021-12-09 10:48:25 +01:00
75965124ef (v1.7.1.9060) bugfix set_ab_names 2021-12-05 23:11:10 +01:00
7965468ccd (v1.7.1.9058) vars selection for set_ab_names() 2021-12-05 22:06:45 +01:00
9a2c431e16 (v1.7.1.9053) fortify() methods 2021-11-01 13:51:13 +01:00
91149d6d35 (v1.7.1.9052) eucast-update 2021-10-06 16:22:36 +02:00
2bcf28281d (v1.7.1.9049) unit tests 2021-10-05 09:58:08 +02:00
bcab74fb6d (v1.7.1.9037) dplyr grouping fix on windows? 2021-08-31 17:06:44 +02:00
986bd826ee (v1.7.1.9035) dplyr grouping fix on windows? 2021-08-30 15:43:12 +02:00
6ca6a3f6df (v1.7.1.9032) dplyr grouping fix on windows? 2021-08-30 14:17:27 +02:00