9feef53bde
(v0.8.0.9037) complete documentation rewrite
2019-11-28 23:00:37 +01:00
c5f00f4a9f
(v0.8.0.9036) complete documentation rewrite
2019-11-28 22:32:17 +01:00
09c4b04cd0
(v0.8.0.9007) Enterobacterales order
2019-10-30 23:02:50 +01:00
66d405ff57
(v0.7.1.9080) new LIS codes
2019-09-22 17:19:59 +02:00
3596adb295
(v0.7.1.9076) mo codes
2019-09-20 12:33:05 +02:00
e2aa4f996b
(v0.7.1.9075) new microorganism codes
2019-09-18 15:46:09 +02:00
7108454ba5
(v0.7.1.9055) algorithm improvements
2019-08-13 16:15:08 +02:00
6598c5615d
(v0.7.1.9033) 5000 new fungi
2019-08-09 23:22:10 +02:00
3a1f960f89
(v0.7.1.9024) eucast_rules() fix, new MOs
2019-08-06 14:39:22 +02:00
254745061c
(v0.7.0.9008) T. vaginalis, rsi_df
2019-06-13 14:28:46 +02:00
270aa0dd33
v0.7.0
2019-06-03 17:45:22 +02:00
702da574c0
website update
2019-06-02 19:50:22 +02:00
bd73988f15
(v0.6.1.9053) prerelease fixes
2019-06-02 19:23:19 +02:00
493ae2ba0c
(v0.6.1.9044) first_isolate fix for species
2019-05-31 14:25:11 +02:00
cc403169c6
first isolate missing dates fix
2019-05-13 14:56:23 +02:00
30b559827c
documentation update
2019-04-07 22:40:02 +02:00
c6a12266e7
DSMZ data
2019-03-18 14:29:41 +01:00
e835525cf6
unknown codes, rsi fix
2019-03-02 22:47:04 +01:00
2565b60024
rlang dependency, new fungi
2019-02-28 13:56:28 +01:00
54162522bd
age_groups fix
2019-02-27 11:36:12 +01:00
41ad7a22c8
mo_rank mo_url, added Tremellales
2019-02-22 22:12:10 +01:00
68a9a35ed6
algorithm update
2019-02-21 18:55:52 +01:00
13120f465f
website update
2019-02-20 13:57:23 +01:00
8dc027309e
website update
2019-02-20 10:38:24 +01:00
fb1fc3686c
Catalogue of life
2019-02-20 00:04:48 +01:00
54f8258f8c
Catalogue of Life, replaces ITIS
2019-02-18 02:33:37 +01:00
ed30312048
mo codes for WHONET
2019-02-08 16:06:54 +01:00
3efb54d016
freq update
2019-01-29 20:20:09 +01:00
a2d3ea280a
text updates
2019-01-27 13:55:23 +01:00
f4ff98b470
WHO update, antibiotics update
2019-01-25 13:18:41 +01:00
46dcc7e2e8
set_mo_source
2019-01-21 15:53:01 +01:00
5aad26035c
edited g.test
2019-01-12 11:06:58 +01:00
6b2d464f8c
big website update, licence txt update
2019-01-02 23:24:07 +01:00
01a6d56334
add kingdom to mo_taxonomy
2018-12-10 21:47:25 +01:00
6b0f4ffbd4
new kingdom
2018-11-09 13:11:54 +01:00
5476fecc73
eucast update
2018-11-01 20:23:33 +01:00
9cd4ab928a
speed improvement as.mo, freq title
2018-10-31 12:10:49 +01:00
95c9fdc552
CRAN fixes for release 0.4.0
...
https://cran.r-project.org/web/checks/check_results_AMR.html
2018-10-09 13:53:33 +02:00
ed17db0263
renamed year columns to ref
2018-10-01 14:44:40 +02:00
3119a221e5
authors from ITIS, diff for freq
2018-10-01 11:39:43 +02:00
2b0080995e
speed improvement for as.mo, more old taxonomic names
2018-09-27 23:23:48 +02:00
450992baea
new: 1680 old taxonomic names
2018-09-25 16:44:40 +02:00
9c566585b0
first inclusion of ITIS data
2018-09-24 23:33:29 +02:00
5d80cef338
added taxonomic data from ITIS
2018-09-17 20:53:32 +02:00
b792a2754e
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
2018-09-16 16:43:29 +02:00
b83e6a9380
algoritm improvement, removed all Catabacter except for C. hongkongensis
2018-09-10 11:40:54 +02:00
26f5be0033
support for portuguese, language determination based on system
2018-09-08 16:06:47 +02:00
790bd1622d
added vanA to vanE positive Enterococci
2018-09-05 09:49:19 +02:00
b388e3fee7
Support for German and Spanish microorganism properties, cleanup
2018-09-04 11:33:30 +02:00
75fe4d401f
new MOs, cleanup
2018-09-01 21:19:46 +02:00
5965d3c794
replaced bactid by mo
2018-08-31 13:36:19 +02:00
972fc4f6c7
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
2018-08-28 13:51:13 +02:00
ae2433a020
rsi family for resistance analysis
2018-08-03 14:49:29 +02:00
6262315527
Becker classification
...
Lancefield classification
Added Lancefield groups to `microorganisms` data set
2018-08-02 13:15:45 +02:00
d9e204031d
update to septic_patients, speed improvements
2018-07-25 14:17:04 +02:00
uscloud
dcc26dd942
Update freq function
2018-05-22 16:34:22 +02:00
6eaf594cb7
update data info
2018-05-01 09:57:50 +02:00
53464ff1c8
- For functions first_isolate, EUCAST_rules the antibiotic column names are case-insensitive
...
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
