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Author	SHA1	Message	Date
Claude	b3b8d301ff	Fix #287 (complex fallback) and #288 (species epithet scoring bias) ... #287: as.mo() now strips " complex" from input when that exact complex is not in the taxonomy and retries with the bare name, so inputs like "Proteus vulgaris complex" no longer return NA. #288: mo_matching_score() applies a ×2 bonus when the input has an abbreviated genus (≤3 chars) and the candidate's species epithet exactly matches the input species epithet. This ensures "S. apiospermum" resolves to Scedosporium apiospermum rather than Staphylococcus aureus, overcoming the kingdom/prevalence denominator bias in favour of common bacteria. https://claude.ai/code/session_01VH4Ju4Xq9aW1AHuoVbjGEo	2026-05-06 15:11:31 +00:00
Claude	9707450b89	Fix emend. author bug in get_author_year() and update ref documentation ... Strip emend. and everything after it so the ref column retains the combination authority, not the emendation author. Update data.R and mo_property.R docs to describe the correct semantics of the ref field. https://claude.ai/code/session_01VH4Ju4Xq9aW1AHuoVbjGEo	2026-05-02 14:34:45 +00:00