Commit Graph

132 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 5679ccdaf9 (v1.6.0.9017) extra system codes 2021-05-04 12:47:33 +02:00
dr. M.S. (Matthijs) Berends f33e61bac7 (v1.6.0.9016) website update and c() fixes 2021-05-03 13:06:43 +02:00
dr. M.S. (Matthijs) Berends 12a8d59869 (v1.6.0.9015) italicise_taxonomy 2021-05-03 10:47:32 +02:00
dr. M.S. (Matthijs) Berends 70b803dbb6 (v1.6.0.9008) unlike, bugfix for col_mo naming 2021-04-23 09:59:36 +02:00
dr. M.S. (Matthijs) Berends c6289c3fc3 (v1.6.0.9007) documentation custom eucast rules, progress bar as.mo 2021-04-20 10:46:17 +02:00
dr. M.S. (Matthijs) Berends 6ff5448192 (v1.6.0.9001) support Inf for episodes 2021-04-12 12:35:13 +02:00
dr. M.S. (Matthijs) Berends a7c9b4c295 (v1.5.0.9039) handle first isolates for missing antibiograms 2021-03-08 02:38:32 +01:00
dr. M.S. (Matthijs) Berends 461793dc34 (v1.5.0.9038) quick test 2021-03-08 01:24:37 +01:00
dr. M.S. (Matthijs) Berends 2f0fc3cab7 (v1.5.0.9035) quick test 2021-03-07 22:15:25 +01:00
dr. M.S. (Matthijs) Berends 0d29bde693 (v1.5.0.9030) as.ab() speed improvement 2021-03-05 10:32:09 +01:00
dr. M.S. (Matthijs) Berends 0e0e3c4ffa (v1.5.0.9029) added missing families and orders 2021-03-05 01:31:46 +01:00
dr. M.S. (Matthijs) Berends 8fda473e49 (v1.5.0.9015) unit test fix, grouped first isolates 2021-02-04 16:48:16 +01:00
dr. M.S. (Matthijs) Berends 2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00
dr. M.S. (Matthijs) Berends 4eab095306 (v1.5.0.9006) major documentation update 2021-01-18 16:57:56 +01:00
dr. M.S. (Matthijs) Berends bc00470dca (v1.5.0.9001) more informative argument errors 2021-01-14 14:41:44 +01:00
dr. M.S. (Matthijs) Berends d014955ce0 (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
dr. M.S. (Matthijs) Berends 8b52f9b1be (v1.4.0.9047) unit tests 2020-12-27 00:30:28 +01:00
dr. M.S. (Matthijs) Berends 81af41da3a (v1.4.0.9041) updates based on review 2020-12-17 16:22:25 +01:00
dr. M.S. (Matthijs) Berends fdf29e6c5b (v1.4.0.9031) as.ab() fix 2020-12-03 22:30:14 +01:00
dr. M.S. (Matthijs) Berends deefce9520 (v1.4.0.9021) more robust class setting 2020-11-16 16:57:55 +01:00
dr. M.S. (Matthijs) Berends 15c732703d (v1.4.0.9015) bugfix 2020-11-10 16:35:56 +01:00
dr. M.S. (Matthijs) Berends 5a607abb36 (v1.4.0.9011) message formatting 2020-10-27 15:56:51 +01:00
dr. M.S. (Matthijs) Berends ddae8085e1 (v1.4.0.9002) bugfix 2020-10-19 20:44:45 +02:00
dr. M.S. (Matthijs) Berends 4e9ccb4435 (v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening 2020-10-19 17:09:19 +02:00
dr. M.S. (Matthijs) Berends 28e77680c5 (v1.4.0) matching score update 2020-10-08 11:16:03 +02:00
dr. M.S. (Matthijs) Berends c04dc852cf (v1.3.0.9039) lifecycle updates, added excess kurtosis 2020-10-04 21:02:16 +02:00
dr. M.S. (Matthijs) Berends 9667c2994f (v1.3.0.9029) eucast rules fix, unique() 2020-09-25 14:44:50 +02:00
dr. M.S. (Matthijs) Berends c19095a3d5 (v1.3.0.9026) eucast expert rules 3.2 2020-09-24 00:30:11 +02:00
dr. M.S. (Matthijs) Berends d049cce69b (v1.3.0.9023) optimalisation 2020-09-19 11:54:01 +02:00
dr. M.S. (Matthijs) Berends 4e40e42011 (v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix 2020-09-18 16:05:53 +02:00
dr. M.S. (Matthijs) Berends c4b87fe241 (v1.3.0.9014) as.mo() speed improvement 2020-09-03 12:31:48 +02:00
dr. M.S. (Matthijs) Berends 74a172ef55 (v1.3.0.9010) S3 extensions without dependencies 2020-08-28 21:55:47 +02:00
dr. M.S. (Matthijs) Berends 9b8db57c65 (v1.3.0.9008) also tibble printing for ab 2020-08-26 15:34:12 +02:00
dr. M.S. (Matthijs) Berends c8c8bb4e3a (v1.3.0.9006) website update 2020-08-21 11:40:13 +02:00
dr. M.S. (Matthijs) Berends 08d62bb5d5 (v1.3.0.9002) intrinsic_resistant data set 2020-08-14 13:36:10 +02:00
dr. M.S. (Matthijs) Berends 6ab468362d (v1.2.0.9034) code cleaning 2020-07-13 09:17:24 +02:00
dr. M.S. (Matthijs) Berends 76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
dr. M.S. (Matthijs) Berends 298e67a45b (v1.2.0.9022) as.ab() improvement 2020-07-01 16:21:36 +02:00
dr. M.S. (Matthijs) Berends 240d817b4e (v1.2.0.9018) ab_from_text() improvement 2020-06-26 13:15:46 +02:00
dr. M.S. (Matthijs) Berends 4f6f056077 (v1.2.0.9017) ab_from_text() improvement 2020-06-26 12:31:27 +02:00
dr. M.S. (Matthijs) Berends b31003c0b6 (v1.2.0.9016) fix in rsi_calc() 2020-06-26 10:21:22 +02:00
dr. M.S. (Matthijs) Berends 344bbd57f4 (v1.2.0.9014) ab_from_text() 2020-06-25 17:34:50 +02:00
dr. M.S. (Matthijs) Berends 02d07b9fb3 (v1.2.0.9000) eucast_rules() fix for tibbles 2020-06-02 16:05:56 +02:00
dr. M.S. (Matthijs) Berends b44e2c9202 v1.2.0 2020-05-28 16:48:55 +02:00
dr. M.S. (Matthijs) Berends 86d44054f0 (v1.1.0.9020) updated taxonomy 2020-05-27 16:37:49 +02:00
dr. M.S. (Matthijs) Berends e467cc103e (v1.1.0.9017) as.ab() update, added ab_url() 2020-05-22 20:15:19 +02:00
dr. M.S. (Matthijs) Berends 1b1e243d14 (v1.1.0.9016) small fix 2020-05-21 12:28:57 +02:00
dr. M.S. (Matthijs) Berends cb1814f5ff (v1.1.0.9013) lose dependencies 2020-05-19 13:18:01 +02:00
dr. M.S. (Matthijs) Berends 19703eb5d3 (v1.1.0.9012) lose dependencies 2020-05-19 12:08:49 +02:00
dr. M.S. (Matthijs) Berends 7f3da74b17 (v1.1.0.9004) lose dependencies 2020-05-16 13:05:47 +02:00
dr. M.S. (Matthijs) Berends b040185269 (v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI 2020-04-29 14:33:44 +02:00
dr. M.S. (Matthijs) Berends 7a6f819232 (v1.0.1.9006) added generic CLSI rules 2020-04-14 14:12:31 +02:00
dr. M.S. (Matthijs) Berends 219cff403f (v1.0.1.9004) Support dplyr 1.0.0 2020-03-14 14:05:43 +01:00
dr. M.S. (Matthijs) Berends 11f00f8a0a (v0.9.0.9025) update as.rsi documentation 2020-02-16 22:43:56 +01:00
dr. M.S. (Matthijs) Berends 9b8b02960e (v0.9.0.9023) EUCAST 2020 guidelines 2020-02-14 19:54:13 +01:00
dr. M.S. (Matthijs) Berends f152ab9a48 (v0.9.0.9018) Remove mo_history 2020-01-31 23:27:38 +01:00
dr. M.S. (Matthijs) Berends 449d9bde35 (v0.9.0.9012) Support for LOINC codes 2020-01-26 20:20:00 +01:00
dr. M.S. (Matthijs) Berends 64f5ceef03 (v0.9.0.9009) antibiotics data set update 2020-01-08 11:30:33 +01:00
dr. M.S. (Matthijs) Berends ced1a7b7fa (v0.9.0.9008) Happy new year! Add lifecycles 2020-01-05 17:22:09 +01:00
dr. M.S. (Matthijs) Berends c5f00f4a9f (v0.8.0.9036) complete documentation rewrite 2019-11-28 22:32:17 +01:00
dr. M.S. (Matthijs) Berends ef640add2d (v0.8.0.9021) update vignettes 2019-11-09 11:33:22 +01:00
dr. M.S. (Matthijs) Berends e2d05cb1b0 (v0.8.0.9017) keywords update 2019-11-06 14:43:23 +01:00
dr. M.S. (Matthijs) Berends 00cdb498a0 (v0.7.1.9102) lintr 2019-10-11 17:21:02 +02:00
dr. M.S. (Matthijs) Berends b6653a620a (v0.7.1.9093) as.ab() fix 2019-10-06 21:07:38 +02:00
dr. M.S. (Matthijs) Berends 8bc4081b03 (v0.7.1.9092) as.ab() improvements 2019-10-04 15:36:12 +02:00
dr. M.S. (Matthijs) Berends 7a6fce4eb8 (v0.7.1.9062) mo/ab assignment improvements 2019-08-26 16:02:03 +02:00
dr. M.S. (Matthijs) Berends 920212e815 (v0.7.1.9056) mo and ab subsetting 2019-08-14 14:57:06 +02:00
dr. M.S. (Matthijs) Berends bd252a2984 (v0.7.1.9036) preserve ab/mo classes in subsetting 2019-08-12 14:48:09 +02:00
dr. M.S. (Matthijs) Berends 1d423cca89 (v0.7.1.9035) cephalosporins and unit tests 2019-08-11 19:07:26 +02:00
dr. M.S. (Matthijs) Berends 1ce4b72dd2 (v0.7.1.9031) include_unknown for first_isolate() 2019-08-08 22:39:42 +02:00
dr. M.S. (Matthijs) Berends 90c874025a (v0.7.1.9027) tibble printing 2019-08-07 15:37:39 +02:00
dr. M.S. (Matthijs) Berends 254745061c (v0.7.0.9008) T. vaginalis, rsi_df 2019-06-13 14:28:46 +02:00
dr. M.S. (Matthijs) Berends 44ab53128e (v0.7.0.9006) ab algorithm fix for ATC codes 2019-06-11 15:31:32 +02:00
dr. M.S. (Matthijs) Berends 8f674e19bb (v0.7.0.9005) ab algorithm update 2019-06-11 14:18:25 +02:00
dr. M.S. (Matthijs) Berends ec48f1d83b (v0.7.0.9003) scale fix 2019-06-08 23:50:06 +02:00
dr. M.S. (Matthijs) Berends f50d3a5ba1 (v0.7.0.9002) scale fix 2019-06-08 15:00:28 +02:00
dr. M.S. (Matthijs) Berends f02679fb63 (v0.7.0.9001) new pathovars, small fixes 2019-06-07 22:47:37 +02:00
dr. M.S. (Matthijs) Berends 7e0e171512 website update 2019-05-23 19:39:07 +02:00
dr. M.S. (Matthijs) Berends b0033dae1b website update 2019-05-17 20:22:04 +02:00
dr. M.S. (Matthijs) Berends 4c3cf85a65 ab_info, other bug fixes 2019-05-16 21:20:00 +02:00
dr. M.S. (Matthijs) Berends 38a4421450 CI tests 2019-05-13 10:10:16 +02:00
dr. M.S. (Matthijs) Berends 68cc7ef0d0 new antibiotics 2019-05-10 16:44:59 +02:00