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Commit Graph

55 Commits

Author SHA1 Message Date
cee64ef050 fix Travis 2018-04-02 15:03:22 +02:00
c182a9673d fix clipboard on linux 2018-04-02 11:11:21 +02:00
abcb4accbd Update .travis.yml 2018-03-29 15:17:48 +02:00
b7f29aa748 Update first_isolates.R 2018-03-29 15:15:31 +02:00
2647dacc0a add clipbaord support for Linux and macOS 2018-03-29 15:07:36 +02:00
f1dbed6fcc Update clipboard.R 2018-03-29 14:56:40 +02:00
e2a5202b69 Update test-clipboard.R 2018-03-29 14:47:52 +02:00
258e080756 Update test-clipboard.R 2018-03-29 14:26:26 +02:00
136272cb71 Update clipboard.R 2018-03-29 14:16:42 +02:00
9f943708cc Update .travis.yml 2018-03-29 14:07:54 +02:00
fd04df5f9d Update clipboard.R 2018-03-29 13:23:02 +02:00
dbec56c68a Update .travis.yml 2018-03-29 13:16:08 +02:00
339b445a30 Update test-clipboard.R 2018-03-29 13:12:49 +02:00
2f4823f7a7 Update clipboard.R 2018-03-29 13:10:55 +02:00
ff90188f41 Update .travis.yml 2018-03-29 12:56:03 +02:00
1b3cc41c08 fix tests 2018-03-27 17:58:46 +02:00
6f7730dcaa add tests using testthat 2018-03-27 17:43:42 +02:00
c26839b08e Test on Linux and Mac 2018-03-23 14:59:50 +01:00
9637b43357 Remove Windows only function 2018-03-23 14:59:02 +01:00
39eb307968 Remove Windows only function 2018-03-23 14:58:46 +01:00
1b3daebc84 Remove Windows only function 2018-03-23 14:52:56 +01:00
53464ff1c8 - For functions first_isolate, EUCAST_rules the antibiotic column names are case-insensitive
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
e1e19af625 README update 2018-03-22 13:45:04 +01:00
fe803f7279 use guess_bactid for GLIMS codes 2018-03-19 21:23:21 +01:00
c765f424ab typo 2018-03-19 21:03:23 +01:00
dd2517ecb7 - Added new algorithm to determine weighted isolates, can now be points or keyantibiotics, see ?first_isolate`
- Function `first_isolate` supports tidyverse-like evaluation of parameters (no need to quote them anymore)
- Functions `as.rsi` and `as.mic` now add the package name and version as attribute
2018-03-19 20:39:23 +01:00
2db25b3b38 Use R 3.2 to make covr work 2018-03-19 12:49:22 +01:00
502a44eb25 - Added new function guess_bactid to determine the ID of a microorganism based on genus/species
- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
2018-03-19 12:43:22 +01:00
0fec64a240 Add ORCID identifier 2018-03-19 10:28:35 +01:00
6c67c8f6c1 examples edit v0.1.1 2018-03-14 09:58:58 +01:00
46db3f7b13 import from graphics 2018-03-13 15:40:10 +01:00
53959d40c7 typo in examples 2018-03-13 14:40:52 +01:00
04fc3573ec add barplots 2018-03-13 14:34:10 +01:00
e4b371d30a add MIC values
add badges to readme
2018-03-13 11:57:30 +01:00
4ea0333349 Minor text changes for DDD definition 2018-03-13 11:48:30 +01:00
aae393f2a9 Update .Rbuildignore 2018-03-11 21:20:28 +01:00
692116b4dc Create .travis.yml 2018-03-11 21:00:11 +01:00
34e70a65ed added septic_patients 2018-02-27 20:01:02 +01:00
98b2b99913 new atc codes 2018-02-26 16:06:49 +01:00
8a603876d2 misc 2018-02-26 15:53:09 +01:00
915d4db23b add rows to summary 2018-02-26 14:37:40 +01:00
6fa05fe33b first isolates 2018-02-26 14:06:31 +01:00
d36a391747 export first_isolate 2018-02-26 12:15:52 +01:00
be51a95448 rename columns 2018-02-26 10:53:54 +01:00
3f859210d5 new date for push test 2018-02-22 22:04:22 +01:00
11683b082e EUCAST man pages 2018-02-22 21:42:01 +01:00
10380bcfae add NEWS 2018-02-22 21:37:10 +01:00
d8da8daf9a First CRAN submission edits v0.1.0 2018-02-22 20:48:48 +01:00
77194527b5 readme 2018-02-21 12:21:34 +01:00
942c41ae9c Update README.md 2018-02-21 12:19:42 +01:00