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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 10:06:12 +01:00
Commit Graph

166 Commits

Author SHA1 Message Date
d7de1bc33d
(v2.1.1.9118) move ggplot2 plotting functions to general 'plotting' man page 2024-12-14 19:41:15 +01:00
bfef094bbc
(v2.1.1.9117) fix unit tests for old R versions 2024-12-13 10:35:17 +01:00
31a0da0d3a (v2.1.1.9106) bump version nr for Python testing 2024-11-21 11:22:37 +01:00
a80bb5146e add Python package to repo 2024-11-21 11:07:55 +01:00
da6321c504 (v2.1.1.9102) fix sir 2024-10-18 10:58:57 +02:00
11b1dc2b02 Fix Py 2024-10-17 15:28:13 +02:00
b1399259e7 (v2.1.1.9100) PyPI update 2024-10-17 15:22:19 +02:00
40edc16fdf fix PyPI 2024-10-15 17:31:47 +02:00
5c4d8fcd2a (v2.1.1.9095) Python support 2024-10-15 17:12:55 +02:00
94501371cd (v2.1.1.9094) fix antibiotics 2024-10-10 16:38:20 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
fc269e667d unit test fix 2024-05-20 18:58:35 +02:00
0d8a91db49 rename pre-commit hook to pre-commit checks (no-check) 2024-04-23 10:55:48 +02:00
7cd9ca274c add strep groups to ABCG 2023-07-12 11:41:25 +01:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
e1966503ee unit testing R4.3 2023-05-26 20:37:00 +02:00
0bcf55d3b6 improve as.mo() 2023-05-24 15:55:53 +02:00
Dr. Matthijs Berends
af139a3c82
unit test fix for old R versions 2023-01-21 23:53:31 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
86e28bafce add mo_pathogenicity 2023-01-06 13:35:37 +01:00
4801a6067e unit tests 2023-01-06 11:22:02 +01:00
8a0a0d4682 unit tests 2023-01-06 10:08:25 +01:00
268ec31d92 unit tests 2023-01-05 18:21:48 +01:00
5361c0b2a0 limit GitHub runners 2023-01-05 15:41:07 +01:00
51c0f0814e new setup unit tests 2023-01-05 15:03:18 +01:00
a0ee86536a unit tests 2023-01-05 14:43:18 +01:00
1db74e86cd good start-up practice 2022-12-29 16:23:57 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
Dr. Matthijs Berends
d2edcf51ad
Update website.yaml 2022-11-12 12:10:33 +01:00
8d1679bab3 website update 2022-11-12 09:44:36 +01:00
6ad7857d39 fix missing R breakpoints 2022-10-29 14:15:23 +02:00
c2801ba7a1 new rsi_translation 2022-10-22 22:00:15 +02:00
bfca21bd3f precommit update 2022-10-21 19:31:46 +02:00
Dr. Matthijs Berends
3102beb241
Update check-release.yaml 2022-10-21 09:59:09 +02:00
Dr. Matthijs Berends
74bcc41558
Move older test versions to Windows 2022-10-20 19:39:25 +02:00
Dr. Matthijs Berends
fed3b6440f
Unit test fix 2022-10-19 08:14:38 +02:00
3fc39198d0 unit test fix 2022-10-18 23:03:16 +02:00
e5e6d2200d fix add manual ab 2022-10-18 22:53:38 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
3fca703fbf new AMR distance function 2022-08-30 21:48:02 +02:00
fbd5d32541 small fixes 2022-08-29 09:35:36 +02:00
e7af5fc716 fix AMR vignette 2022-08-28 22:38:08 +02:00
2ed5f13880 Fixes #57 2022-08-28 21:13:26 +02:00
1e4eaf23f2 unit tests 2022-08-28 20:49:04 +02:00
21b4552f5a unit test fix 2022-08-28 20:10:05 +02:00
c44ddf272f fix for R <= 3.3 2022-08-28 19:34:04 +02:00
71db246d5c unit test fix 2022-08-28 19:17:12 +02:00
Dr. Matthijs Berends
0d67db4f32
Update check.yaml 2022-08-28 16:03:23 +02:00
Dr. Matthijs Berends
95f9563f58
Update check.yaml 2022-08-28 13:42:16 +02:00