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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 09:26:11 +01:00
Commit Graph

93 Commits

Author SHA1 Message Date
9fb891eee2 (v2.1.1.9087) update unit tests 2024-10-04 15:28:44 +02:00
50a9f8f0e0 (v2.1.1.9086) website update 2024-10-02 10:20:05 +02:00
681fe011fe (v2.1.1.9082) algorithm updates 2024-09-30 18:46:55 +02:00
ac1c40d8bb (v2.1.1.9081) HUGE microorganisms update for fungi! 2024-09-29 22:17:56 +02:00
7258a491b9 (v2.1.1.9068) fix for mo_url() and as.mo() for synonyms 2024-07-17 14:29:55 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
7a4628b73f Added C. freundii complex and Y. pseudotuberculosis complex 2023-07-14 10:49:06 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
91fa73dedf add oxygen tolerance 2023-05-11 21:56:27 +02:00
9148a2dcf4 fix mo_rank() for 'unknown' MOs 2023-04-20 15:20:41 +02:00
1a02d302d4 Fix translatable strings 2023-04-15 09:32:13 +02:00
ed70f95380 Fix clinical breakpoints 2023-04-14 23:14:34 +02:00
147f9112e9 Fix some WHONET codes 2023-04-14 11:12:26 +02:00
4416394e10 website update 2023-02-26 21:26:58 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
f0a2cdbf5e update mo algorithm 2022-12-20 16:14:04 +01:00
b1b7534c78 incorporate Bartlett et al (2022) 2022-12-19 15:32:41 +01:00
23fe427cbc Fixes for Salmonella 2022-12-17 14:31:33 +01:00
5f3a7694aa microorganisms update, added Salmonella groups 2022-12-16 16:10:43 +01:00
8da2467209 updated taxonomy 2022-12-12 00:14:56 +01:00
56dad34e68 update prevalence with new phyla 2022-12-09 13:37:08 +01:00
6ad7857d39 fix missing R breakpoints 2022-10-29 14:15:23 +02:00
c2801ba7a1 new rsi_translation 2022-10-22 22:00:15 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
3f2f60ab77 language updates 2022-08-19 12:33:14 +02:00
ab97268f4c (v1.8.1.9014) add Toxoplasma 2022-08-12 23:27:15 +02:00
7f981e7778 (v1.8.1.9013) add Toxoplasma 2022-06-10 13:15:23 +02:00
b84d647cac (v1.8.1.9012) update prevalence of some genera 2022-06-03 13:28:55 +02:00
5375f75829 (v1.7.1.9056) unit tests 2021-11-29 11:55:18 +01:00
c8698347cb (v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers 2021-11-29 10:38:38 +01:00
37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00
4e0a9533ad (v1.5.0.9041) SNOMED update 2021-03-11 21:42:30 +01:00
0d29bde693 (v1.5.0.9030) as.ab() speed improvement 2021-03-05 10:32:09 +01:00
0e0e3c4ffa (v1.5.0.9029) added missing families and orders 2021-03-05 01:31:46 +01:00
ddf88345f1 (v1.5.0.9028) Updated taxonomy until March 2021 2021-03-04 23:28:32 +01:00
c4b87fe241 (v1.3.0.9014) as.mo() speed improvement 2020-09-03 12:31:48 +02:00
09fba38ea6 (v1.2.0.9035) as.mo() speed improvement 2020-07-22 10:24:23 +02:00
76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
d9a4b0bcaf (v1.1.0.9021) 1st isolates update 2020-05-28 10:51:56 +02:00
86d44054f0 (v1.1.0.9020) updated taxonomy 2020-05-27 16:37:49 +02:00
19703eb5d3 (v1.1.0.9012) lose dependencies 2020-05-19 12:08:49 +02:00
a13c62e6e8 (v0.9.0.9016) Support SNOMED codes 2020-01-27 19:14:23 +01:00
09c4b04cd0 (v0.8.0.9007) Enterobacterales order 2019-10-30 23:02:50 +01:00
3e5ab53209 (v0.8.0.9002) eucast_rules() fix for S. maltophilia 2019-10-23 14:48:25 +02:00
59af355a89 (v0.7.1.9101) NEWS update, fix authors 2019-10-09 10:52:19 +02:00
66d405ff57 (v0.7.1.9080) new LIS codes 2019-09-22 17:19:59 +02:00
3596adb295 (v0.7.1.9076) mo codes 2019-09-20 12:33:05 +02:00
e2aa4f996b (v0.7.1.9075) new microorganism codes 2019-09-18 15:46:09 +02:00
7108454ba5 (v0.7.1.9055) algorithm improvements 2019-08-13 16:15:08 +02:00