27 Commits

Include renames

Author	SHA1	Message	Date
dr. M.S. (Matthijs) Berends	0736ac7a7e	(v2.1.1.9089) website update	2024-10-04 15:44:05 +02:00
dr. M.S. (Matthijs) Berends	50a9f8f0e0	(v2.1.1.9086) website update	2024-10-02 10:20:05 +02:00
dr. M.S. (Matthijs) Berends	681fe011fe	(v2.1.1.9082) algorithm updates	2024-09-30 18:46:55 +02:00
dr. M.S. (Matthijs) Berends	ac1c40d8bb	(v2.1.1.9081) HUGE microorganisms update for fungi!	2024-09-29 22:17:56 +02:00
dr. M.S. (Matthijs) Berends	83907c9c65	add files (no-verify)	2024-07-17 14:31:09 +02:00
dr. M.S. (Matthijs) Berends	640888f408	(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update	2024-07-16 14:53:17 +02:00
dr. M.S. (Matthijs) Berends	7a4628b73f	Added C. freundii complex and Y. pseudotuberculosis complex	2023-07-14 10:49:06 +02:00
dr. M.S. (Matthijs) Berends	acb534102b	new species groups, updated clinical breakpoints	2023-07-08 17:30:05 +02:00
dr. M.S. (Matthijs) Berends	2d97cca6d9	fix reference_df endless loop	2023-06-26 13:52:02 +02:00
dr. M.S. (Matthijs) Berends	91fa73dedf	add oxygen tolerance	2023-05-11 21:56:27 +02:00
dr. M.S. (Matthijs) Berends	9148a2dcf4	fix mo_rank() for 'unknown' MOs	2023-04-20 15:20:41 +02:00
dr. M.S. (Matthijs) Berends	1a02d302d4	Fix translatable strings	2023-04-15 09:32:13 +02:00
dr. M.S. (Matthijs) Berends	ed70f95380	Fix clinical breakpoints	2023-04-14 23:14:34 +02:00
dr. M.S. (Matthijs) Berends	147f9112e9	Fix some WHONET codes	2023-04-14 11:12:26 +02:00
dr. M.S. (Matthijs) Berends	4416394e10	website update	2023-02-26 21:26:58 +01:00
dr. M.S. (Matthijs) Berends	9e99e66f01	use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi	2023-02-06 11:57:22 +01:00
dr. M.S. (Matthijs) Berends	f0a2cdbf5e	update mo algorithm	2022-12-20 16:14:04 +01:00
dr. M.S. (Matthijs) Berends	b1b7534c78	incorporate Bartlett et al (2022)	2022-12-19 15:32:41 +01:00
dr. M.S. (Matthijs) Berends	23fe427cbc	Fixes for Salmonella	2022-12-17 14:31:33 +01:00
dr. M.S. (Matthijs) Berends	5f3a7694aa	microorganisms update, added Salmonella groups	2022-12-16 16:10:43 +01:00
dr. M.S. (Matthijs) Berends	8da2467209	updated taxonomy	2022-12-12 00:14:56 +01:00
dr. M.S. (Matthijs) Berends	56dad34e68	update prevalence with new phyla	2022-12-09 13:37:08 +01:00
dr. M.S. (Matthijs) Berends	6ad7857d39	fix missing R breakpoints	2022-10-29 14:15:23 +02:00
dr. M.S. (Matthijs) Berends	c2801ba7a1	new rsi_translation	2022-10-22 22:00:15 +02:00
Dr. Matthijs Berends	cd2acc4a29	New mo algorithm, prepare for 2.0	2022-10-05 09:12:22 +02:00
dr. M.S. (Matthijs) Berends	4cb1db4554	data export	2022-08-27 20:51:26 +02:00
dr. M.S. (Matthijs) Berends	3864ab2fb8	Feather and Parquet files	2022-08-26 22:25:15 +02:00