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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 10:46:12 +01:00
Commit Graph

139 Commits

Author SHA1 Message Date
18b75356a9 re-add atc_ddd and atc_groups 2019-01-27 13:33:43 +01:00
f836722269 atc_ functions 2019-01-26 23:22:56 +01:00
f4ff98b470 WHO update, antibiotics update 2019-01-25 13:18:41 +01:00
9529d097b6 as.mo 2019-01-21 21:24:40 +01:00
46dcc7e2e8 set_mo_source 2019-01-21 15:53:01 +01:00
c6c3088e9f select() fix for freq 2019-01-17 12:08:04 +01:00
046d195064 resistance predict 2019-01-15 12:45:24 +01:00
3661df7365 direct warning if failing as.mo 2019-01-12 16:45:20 +01:00
641d866db2 guess_ab_col, benchmarks 2019-01-11 20:37:23 +01:00
193a2d2863 EUCAST update, as.mo bugfix for empty vlaues 2019-01-08 16:23:45 +01:00
0205b6178d guess_mo deprecation 2019-01-06 16:40:55 +01:00
2c798547bf language 2019-01-05 21:40:04 +01:00
80ea555663 guess_ab 2019-01-03 23:56:19 +01:00
6b2d464f8c big website update, licence txt update 2019-01-02 23:24:07 +01:00
2e4d703338 eucast rules fix, 1st isolate fix, website update 2018-12-31 01:48:53 +01:00
92a32b62a7 new website, freq updates 2018-12-29 22:24:19 +01:00
0b8084871d dplyr 0.8.0 support, fixes #7 2018-12-22 22:39:34 +01:00
b937662a97 limits for scale_y_percent - Licence update 2018-12-16 22:45:12 +01:00
2018d5b477 age and age_groups 2018-12-15 22:40:07 +01:00
857f565db0 reorganised notes and warnings 2018-12-14 10:52:20 +01:00
dec4947103 freq header fix for NAs 2018-12-14 10:08:51 +01:00
81af7be36e note about portions 2018-12-14 07:23:25 +01:00
01a6d56334 add kingdom to mo_taxonomy 2018-12-10 21:47:25 +01:00
5ab7eb07bc keyab automatic 2018-12-10 15:14:29 +01:00
9478ab71be freq - decimals 2018-12-10 10:13:40 +01:00
8e8a9cd190 AI improvements 2018-12-07 12:04:55 +01:00
60fe98bbbd better as.mo handling 2018-12-06 14:36:39 +01:00
5cfa5bbfe3 v0.5.0 2018-11-30 16:16:04 +01:00
9ddf6dc530 support A. species for as.mo, cleanup 2018-11-24 20:25:09 +01:00
a8132922af unit test read.4d, unselecting freq cols 2018-11-19 13:00:22 +01:00
4fcc2b409a MDRO update 2018-11-16 20:50:50 +01:00
fab64e6728 read.4D improvements 2018-11-15 12:42:35 +01:00
6b0f4ffbd4 new kingdom 2018-11-09 13:11:54 +01:00
84e08f516a grouping var for freq 2018-11-06 16:41:59 +01:00
d15bb2ab3f read_4D 2018-11-05 15:30:49 +01:00
d07e9b904e new function get_locale 2018-11-05 13:20:32 +01:00
d0bc05e5b1 speed improvement is.rsi.eligible 2018-11-02 14:55:29 +01:00
5476fecc73 eucast update 2018-11-01 20:23:33 +01:00
f7687557c9 eucast updates 2018-11-01 17:06:08 +01:00
9cd4ab928a speed improvement as.mo, freq title 2018-10-31 12:10:49 +01:00
87757748bd switch to gitlab 2018-10-23 16:49:40 +02:00
7997de6a6d mdro and 1st isolate improvements 2018-10-23 11:15:05 +02:00
299c5bea43 na freq, removed factors 2018-10-23 09:42:26 +02:00
c2a93b46db breaks param, tidyr dep change, freq markdown 2018-10-22 12:32:59 +02:00
ec15b82fd6 param header for freq 2018-10-19 21:52:08 +02:00
86b03577a7 fix for as.mo, added also_single_tested 2018-10-19 13:53:31 +02:00
b464dd524a new verbose 2018-10-19 00:17:03 +02:00
0ef91be3ac param rules for EUCAST 2018-10-18 12:10:10 +02:00
693f64bdbf new EUCAST rules: clinical breakpoints 2018-10-17 17:32:34 +02:00
d5a41de711 parameter combine_IR 2018-10-16 09:59:31 +02:00