 dr. M.S. (Matthijs) Berends
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ddb23b6e73
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(v2.1.1.9071) update veterinary SIR interpretation, add `only_fungi`
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2024-09-19 11:44:56 +02:00 |
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dr. M.S. (Matthijs) Berends
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640888f408
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(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
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2024-07-16 14:53:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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2dee1d71dc
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(v2.1.1.9053) add `verbose` to `as.sir()`, unit test fix
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2024-06-17 10:38:45 +02:00 |
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dr. M.S. (Matthijs) Berends
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bdbf5198a2
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(v2.1.1.9050) vctrs fix for `sir`, small documentation fixes
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2024-06-15 15:33:49 +02:00 |
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dr. M.S. (Matthijs) Berends
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de17de1be9
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(v2.1.1.9048) vctrs update for sir
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2024-06-13 20:55:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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2899b3c840
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new `mo_group_members()`
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2024-04-19 10:18:21 +02:00 |
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dr. M.S. (Matthijs) Berends
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94e9a4d99b
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update MIC implementation
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2024-04-07 20:22:59 +02:00 |
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dr. M.S. (Matthijs) Berends
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0039cb05d6
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update MIC comparisons
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2024-04-05 16:44:43 +02:00 |
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dr. M.S. (Matthijs) Berends
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35963ca3dc
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vctrs fix
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2024-02-24 18:51:37 +01:00 |
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dr. M.S. (Matthijs) Berends
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4aa5413641
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fix unit test
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2024-02-24 18:14:50 +01:00 |
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dr. M.S. (Matthijs) Berends
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7be4dabbc0
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support veterinary MIC/disk translation
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2024-02-24 15:16:52 +01:00 |
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dr. M.S. (Matthijs) Berends
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c7461766ce
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Remove RSI from package, add extra MIC scale functions
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2023-12-03 11:34:48 +01:00 |
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dr. M.S. (Matthijs) Berends
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7a4628b73f
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Added C. freundii complex and Y. pseudotuberculosis complex
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2023-07-14 10:49:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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8df1cd8d97
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interpretation fixes
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2023-07-11 09:50:45 +02:00 |
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dr. M.S. (Matthijs) Berends
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a4e2e25e3f
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reftbl in plots, speedup for as.sir() and mo_validate
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2023-07-10 16:43:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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acb534102b
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
Dr. Matthijs Berends
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f065945d7b
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Update clinical breakpoints and fix some `as.mo()` bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
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2023-06-22 15:10:59 +02:00 |
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dr. M.S. (Matthijs) Berends
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9591688811
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documentation update
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2023-05-27 10:39:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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c28cfa3a77
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fix documentation
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2023-03-16 08:55:37 +01:00 |
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dr. M.S. (Matthijs) Berends
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80cfc503c2
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check for 2.0
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2023-03-12 13:02:37 +01:00 |
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dr. M.S. (Matthijs) Berends
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049baf0a71
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fix for antibiograms on R < 3.5
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2023-02-24 09:43:10 +01:00 |
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dr. M.S. (Matthijs) Berends
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e70f2cd32c
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knitr format
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2023-02-23 16:27:40 +01:00 |
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dr. M.S. (Matthijs) Berends
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8d902410f9
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unit tests
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2023-02-18 14:56:06 +01:00 |
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dr. M.S. (Matthijs) Berends
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bc434db835
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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1a0dc4bf46
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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9e99e66f01
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use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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dr. M.S. (Matthijs) Berends
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19fd0ef121
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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dr. M.S. (Matthijs) Berends
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b94bc6c67b
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adding mo fixes
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2023-01-14 19:50:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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1db74e86cd
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good start-up practice
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2022-12-29 16:23:57 +01:00 |
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dr. M.S. (Matthijs) Berends
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f619fb683b
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support new mo codes
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2022-12-27 15:16:15 +01:00 |
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dr. M.S. (Matthijs) Berends
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23fe427cbc
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Fixes for Salmonella
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2022-12-17 14:31:33 +01:00 |
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dr. M.S. (Matthijs) Berends
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8da2467209
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updated taxonomy
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2022-12-12 00:14:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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e7d7b94b3e
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no obligatory note on startup
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2022-12-09 15:10:49 +01:00 |
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dr. M.S. (Matthijs) Berends
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31fb81c382
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revised `as.rsi()`, fix for `mdro()`
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2022-11-24 20:29:00 +01:00 |
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Dr. Matthijs Berends
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496c08d851
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Implement extensive support for antiviral agents support (#77)
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2022-11-13 08:46:10 +01:00 |
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dr. M.S. (Matthijs) Berends
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796b972f8a
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extend vctrs support
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2022-10-31 11:19:06 +01:00 |
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dr. M.S. (Matthijs) Berends
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9444ed6d1d
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fix antibiotics error
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2022-10-30 21:05:46 +01:00 |
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dr. M.S. (Matthijs) Berends
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d40e0ef20b
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completely updated `antibiotics`
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2022-10-30 14:31:45 +01:00 |
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dr. M.S. (Matthijs) Berends
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c2801ba7a1
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new rsi_translation
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2022-10-22 22:00:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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76bcd3528c
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move object assignment to AMR_env
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2022-10-14 13:02:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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33227a5d90
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support ab selectors for manual AB codes
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2022-10-11 10:49:55 +02:00 |
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dr. M.S. (Matthijs) Berends
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4fe90092c7
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fix for `NA` in `as.ab()`
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2022-10-10 15:44:59 +02:00 |
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Dr. Matthijs Berends
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cd2acc4a29
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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63fe160322
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new rsi_interpretation_history
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2022-09-01 15:20:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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3fca703fbf
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new AMR distance function
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2022-08-30 21:48:02 +02:00 |
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dr. M.S. (Matthijs) Berends
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4d050aef7c
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styled, unit test fix
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2022-08-28 10:31:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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303d61b473
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new tibble export
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2022-08-27 20:49:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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3864ab2fb8
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Feather and Parquet files
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2022-08-26 22:25:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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952d16de33
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new, automated website
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2022-08-21 16:37:20 +02:00 |