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AMR
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dr. M.S. (Matthijs) Berends dfae4c7e7d fast-forward from pull 
Merge branch 'main' of https://github.com/msberends/AMR into main

# Conflicts:
#	DESCRIPTION
#	R/add_custom_antimicrobials.R
 2022-10-11 10:53:51 +02:00
dr. M.S. (Matthijs) Berends 33227a5d90 support ab selectors for manual AB codes 2022-10-11 10:49:55 +02:00
dr. M.S. (Matthijs) Berends 57d66cd9d0 doc fix 2022-10-10 21:38:39 +02:00
dr. M.S. (Matthijs) Berends 955f9d7020 documentation fix 2022-10-10 21:03:39 +02:00
dr. M.S. (Matthijs) Berends 3deeedc4b6 website fix 2022-10-10 20:21:41 +02:00
dr. M.S. (Matthijs) Berends 82e3198315 add `add_custom_antimicrobials()` 2022-10-10 20:20:39 +02:00
dr. M.S. (Matthijs) Berends 4fe90092c7 fix for `NA` in `as.ab()` 2022-10-10 15:44:59 +02:00
dr. M.S. (Matthijs) Berends 43c638d122 add `mo_current()` 2022-10-10 10:12:08 +02:00
dr. M.S. (Matthijs) Berends b753b84128 fix for mo type translation 2022-10-06 12:11:51 +02:00
dr. M.S. (Matthijs) Berends b9342d103e fix documentation 2022-10-06 11:33:30 +02:00
dr. M.S. (Matthijs) Berends 369e7545da and yet another website fix 2022-10-05 10:17:53 +02:00
dr. M.S. (Matthijs) Berends bc44da0e38 website fix 2022-10-05 10:07:27 +02:00
dr. M.S. (Matthijs) Berends def9fc0d75 fix website 2022-10-05 09:33:21 +02:00
Dr. Matthijs Berends cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
dr. M.S. (Matthijs) Berends 63fe160322 new rsi_interpretation_history 2022-09-01 15:20:57 +02:00
dr. M.S. (Matthijs) Berends 3fca703fbf new AMR distance function 2022-08-30 21:48:02 +02:00
dr. M.S. (Matthijs) Berends fbd5d32541 small fixes 2022-08-29 09:35:36 +02:00
dr. M.S. (Matthijs) Berends e7af5fc716 fix AMR vignette 2022-08-28 22:38:08 +02:00
dr. M.S. (Matthijs) Berends 2ed5f13880 Fixes #57 2022-08-28 21:13:26 +02:00
dr. M.S. (Matthijs) Berends 1e4eaf23f2 unit tests 2022-08-28 20:49:04 +02:00
dr. M.S. (Matthijs) Berends 21b4552f5a unit test fix 2022-08-28 20:10:05 +02:00
dr. M.S. (Matthijs) Berends c44ddf272f fix for R <= 3.3 2022-08-28 19:34:04 +02:00
dr. M.S. (Matthijs) Berends 71db246d5c unit test fix 2022-08-28 19:17:12 +02:00
dr. M.S. (Matthijs) Berends f781998904 amoxicillin interpretation fix 2022-08-28 11:17:53 +02:00
dr. M.S. (Matthijs) Berends 4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
dr. M.S. (Matthijs) Berends 4cb1db4554 data export 2022-08-27 20:51:26 +02:00
dr. M.S. (Matthijs) Berends 303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
dr. M.S. (Matthijs) Berends 164886f50b new workflow files 2022-08-26 23:25:37 +02:00
dr. M.S. (Matthijs) Berends 3cef2ea286 restore LFS 2022-08-26 23:21:31 +02:00
dr. M.S. (Matthijs) Berends 3864ab2fb8 Feather and Parquet files 2022-08-26 22:25:15 +02:00
dr. M.S. (Matthijs) Berends 4da32e3d40 set up Git LFS for large files 2022-08-26 14:02:08 +02:00
dr. M.S. (Matthijs) Berends e05d0365a9 website update 2022-08-25 19:19:16 +02:00
dr. M.S. (Matthijs) Berends 5501cffbb0 website update 2022-08-25 19:18:48 +02:00
dr. M.S. (Matthijs) Berends d3000a9492 website update 2022-08-25 19:16:16 +02:00
dr. M.S. (Matthijs) Berends 2cbce2cefa website update 2022-08-25 19:14:07 +02:00
dr. M.S. (Matthijs) Berends bdbc112f99 website update 2022-08-21 17:22:34 +02:00
dr. M.S. (Matthijs) Berends d6676e9443 disk documentation fix 2022-08-21 16:52:09 +02:00
dr. M.S. (Matthijs) Berends 952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
dr. M.S. (Matthijs) Berends 7226b70c3d update languages 2022-08-20 20:17:14 +02:00
dr. M.S. (Matthijs) Berends ab97268f4c (v1.8.1.9014) add Toxoplasma 2022-08-12 23:27:15 +02:00
dr. M.S. (Matthijs) Berends 7f981e7778 (v1.8.1.9013) add Toxoplasma 2022-06-10 13:15:23 +02:00
dr. M.S. (Matthijs) Berends b84d647cac (v1.8.1.9012) update prevalence of some genera 2022-06-03 13:28:55 +02:00
dr. M.S. (Matthijs) Berends 1b84564d36 (v1.8.1.9011) update prevalence of some genera 2022-06-03 12:43:25 +02:00
dr. M.S. (Matthijs) Berends 70a07bad39 (v1.8.1.9010) random when pkg not loaded 2022-05-16 12:52:50 +02:00
dr. M.S. (Matthijs) Berends 2c5bc73ed6 (v1.8.1.9009) random when pkg not loaded 2022-05-16 09:29:46 +02:00
dr. M.S. (Matthijs) Berends 58ed15e7ac (v1.8.1.9008) website update 2022-05-11 10:26:58 +02:00
dr. M.S. (Matthijs) Berends 6de5375256 (v1.8.1.9007) website update 2022-05-11 10:10:31 +02:00
dr. M.S. (Matthijs) Berends 859224e9d0 (v1.8.1.9006) added EUCAST 2022 and CLSI 2022 2022-05-10 21:34:30 +02:00
dr. M.S. (Matthijs) Berends 680e8e7a41 (v1.8.1.9005) as.rsi() fix for EUCAST 2022-05-10 17:01:37 +02:00
dr. M.S. (Matthijs) Berends d4e22069bc (v1.8.1.9004) fix for table() on MICs 2022-05-09 21:33:27 +02:00
dr. M.S. (Matthijs) Berends 1c891cc90c (v1.8.1.9003) set_mo_source() fix 2022-05-09 20:36:44 +02:00
dr. M.S. (Matthijs) Berends 152db9d1b5 (v1.8.1.9002) fix for table() on MICs 2022-05-09 17:08:40 +02:00
dr. M.S. (Matthijs) Berends 4754848e96 (v1.8.1.9001) update unit tests, fixes #53 2022-04-08 11:02:45 +02:00
dr. M.S. (Matthijs) Berends ccb09706e4 v1.8.1 2022-03-24 23:05:04 +01:00
dr. M.S. (Matthijs) Berends 7b0f1596bd (v1.8.0.9010) as.mo improvement 2022-03-15 17:35:02 +01:00
dr. M.S. (Matthijs) Berends 1b0983e382 (v1.8.1) prerelease 1.8.1 2022-03-14 16:36:10 +01:00
dr. M.S. (Matthijs) Berends 08d387b5ce (v1.8.0.9005) as.rsi() fix 2022-03-10 19:33:25 +01:00
dr. M.S. (Matthijs) Berends ad82bb4ce0 (v1.8.0.9004) MIC printing in tibbles 2022-03-03 21:11:02 +01:00
dr. M.S. (Matthijs) Berends dedbe92322 (v1.8.0.9003) deps update 2022-03-02 23:16:37 +01:00
dr. M.S. (Matthijs) Berends 3b2b2be5f8 (v1.8.0.9002) as.rsi() cleanup, more informative warnings 2022-03-02 15:38:55 +01:00
dr. M.S. (Matthijs) Berends 18e8525d10 (v1.8.0.9001) as.mo improvement, fixes #52 2022-02-26 21:58:23 +01:00
dr. M.S. (Matthijs) Berends be792cc9eb (v1.8.0.9000) unit tests for R 3.3 2022-02-01 17:08:10 +01:00
dr. M.S. (Matthijs) Berends 25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
dr. M.S. (Matthijs) Berends 75dac113b6 (v1.7.1.9077) skimr support only for newer R versions 2021-12-23 13:38:25 +01:00
dr. M.S. (Matthijs) Berends d9274bcd0a (v1.7.1.9075) assignment operator 2021-12-14 22:59:27 +01:00
dr. M.S. (Matthijs) Berends 76dee66852 (v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests 2021-12-14 22:39:23 +01:00
dr. M.S. (Matthijs) Berends bd4bb1d72f (v1.7.1.9073) as.rsi() fix for UTIs 2021-12-14 21:47:14 +01:00
dr. M.S. (Matthijs) Berends 5eef01165e (v1.7.1.9072) as.rsi() fix for UTIs 2021-12-14 12:33:29 +01:00
dr. M.S. (Matthijs) Berends 0cbf8f48b6 (v1.7.1.9071) rsi disk fix 2021-12-13 11:57:34 +01:00
dr. M.S. (Matthijs) Berends 578e7dfee9 (v1.7.1.9070) Better WHONET support 2021-12-13 10:18:28 +01:00
dr. M.S. (Matthijs) Berends f90e27c1b0 (v1.7.1.9069) CLSI 2021 support 2021-12-12 11:36:58 +01:00
dr. M.S. (Matthijs) Berends 1e66a3daf3 (v1.7.1.9068) new logo, unit tests 2021-12-12 11:07:02 +01:00
dr. M.S. (Matthijs) Berends 56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
dr. M.S. (Matthijs) Berends 5b5f70a103 (v1.7.1.9066) mdro EUCAST v3.3 2021-12-11 15:29:30 +01:00
dr. M.S. (Matthijs) Berends e0a2634f14 (v1.7.1.9065) unit tests 2021-12-11 15:13:44 +01:00
dr. M.S. (Matthijs) Berends 77ba4318ea (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00
dr. M.S. (Matthijs) Berends e18c49ed93 (v1.7.1.9063) not_intrinsic_resistant 2021-12-09 10:48:25 +01:00
dr. M.S. (Matthijs) Berends e63defe324 (v1.7.1.9062) website update 2021-12-06 11:12:30 +01:00
dr. M.S. (Matthijs) Berends 1fa3fc6af2 (v1.7.1.9061) bugfix set_ab_names 2021-12-05 23:21:59 +01:00
dr. M.S. (Matthijs) Berends 75965124ef (v1.7.1.9060) bugfix set_ab_names 2021-12-05 23:11:10 +01:00
dr. M.S. (Matthijs) Berends b747036deb (v1.7.1.9059) bugfix set_ab_names 2021-12-05 22:59:06 +01:00
dr. M.S. (Matthijs) Berends 7965468ccd (v1.7.1.9058) vars selection for set_ab_names() 2021-12-05 22:06:45 +01:00
dr. M.S. (Matthijs) Berends 3abe61fd61 (v1.7.1.9057) NAs in get_episode() 2021-12-02 13:32:14 +01:00
dr. M.S. (Matthijs) Berends 5375f75829 (v1.7.1.9056) unit tests 2021-11-29 11:55:18 +01:00
dr. M.S. (Matthijs) Berends c8698347cb (v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers 2021-11-29 10:38:38 +01:00
dr. M.S. (Matthijs) Berends 694cf5ba77 (v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup 2021-11-28 23:01:26 +01:00
dr. M.S. (Matthijs) Berends 9a2c431e16 (v1.7.1.9053) fortify() methods 2021-11-01 13:51:13 +01:00
dr. M.S. (Matthijs) Berends 91149d6d35 (v1.7.1.9052) eucast-update 2021-10-06 16:22:36 +02:00
dr. M.S. (Matthijs) Berends 37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00
dr. M.S. (Matthijs) Berends 8f5e5a3fc2 (v1.7.1.9050) fix for as.mo 2021-10-05 14:00:35 +02:00
dr. M.S. (Matthijs) Berends 2bcf28281d (v1.7.1.9049) unit tests 2021-10-05 09:58:08 +02:00
dr. M.S. (Matthijs) Berends d1b16ce641 (v1.7.1.9048) unit tests 2021-10-04 10:22:10 +02:00
dr. M.S. (Matthijs) Berends 9b97233be2 (v1.7.1.9046) unit tests 2021-10-03 13:50:52 +02:00
dr. M.S. (Matthijs) Berends b0c84cce9c (v1.7.1.9045) unit tests 2021-09-29 20:24:02 +02:00
dr. M.S. (Matthijs) Berends 557ce74fd7 (v1.7.1.9044) unit tests 2021-09-29 20:13:52 +02:00
dr. M.S. (Matthijs) Berends 45f597cac5 (v1.7.1.9043) unit tests 2021-09-29 20:10:44 +02:00
dr. M.S. (Matthijs) Berends e8d3ce05d7 (v1.7.1.9041) new GH actions, branches rename 2021-09-29 16:36:03 +02:00
dr. M.S. (Matthijs) Berends 93a4734b44 (v1.7.1.9040) Support for Danish 2021-09-29 12:12:35 +02:00
dr. M.S. (Matthijs) Berends 5f433d6e5c (v1.7.1.9039) reinitiate all units tests 2021-09-03 13:08:36 +02:00
dr. M.S. (Matthijs) Berends 81a1a432bd (v1.7.1.9038) dplyr grouping fix on windows? 2021-09-01 16:52:55 +02:00