mirror of https://github.com/msberends/AMR.git
39 lines
2.3 KiB
Markdown
39 lines
2.3 KiB
Markdown
# 0.2.0
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#### New
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* Full support for Windows, Linux and macOS
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* Function `guess_bactid` to determine the ID of a microorganism based on genus/species or known abbreviations like MRSA
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* Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
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* Function `MDRO` to determine Multi Drug Resistant Organisms (MDRO) with support for country-specific guidelines. Suggest your own via [this link](https://github.com/msberends/AMR/issues/new?title=New%20guideline%20for%20MDRO&body=%3C--%20Please%20add%20your%20country%20code,%20guideline%20name,%20version%20and%20source%20below%20and%20remove%20this%20line--%3E). Functions `BRMO` and `MRGN` are wrappers for Dutch and German guidelines, respectively
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* Function `freq` to create frequency tables, with additional info in a header
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* New algorithm to determine weighted isolates, can now be `"points"` or `"keyantibiotics"`, see `?first_isolate`
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* New print format for tibbles and data.tables
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#### Changed
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* Support for older R versions, only R 3.1.0 and later is needed
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* Renamed dataset `ablist` to `antibiotics`
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* Renamed dataset `bactlist` to `microorganisms`
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* Added more microorganisms to `bactlist`
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* Added analysis examples on help page of dataset `septic_patients`
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* Added support for character vector in `join` functions
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* Added warnings when a join results in more rows after than before the join
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* Altered `%like%` to make it case insensitive
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* For parameters of functions `first_isolate` and `EUCAST_rules` the column names are now case-insensitive
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* Functions `as.rsi` and `as.mic` now add the package name and version as attribute
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#### Other
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* Expanded README.md with more examples
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* Added ORC IDs of authors to DESCRIPTION file
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* Added unit testing with the `testthat` package
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* Added build tests for Linux and macOS using Travis CI (https://travis-ci.org/msberends/AMR)
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* Added Line coverage checking using CodeCov (https://codecov.io/gh/msberends/AMR/tree/master/R)
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# 0.1.1
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* `EUCAST_rules` applies for amoxicillin even if ampicillin is missing
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* Edited column names to comply with GLIMS, the laboratory information system
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* Added more valid MIC values
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* Renamed 'Daily Defined Dose' to 'Defined Daily Dose'
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* Added barplots for `rsi` and `mic` classes
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# 0.1.0
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* First submission to CRAN.
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