molgenis-ops-rancher/templates/molgenis/1/docker-compose.yml

  molgenis:
    image: registry.webhosting.rug.nl/molgenis/molgenis:stable
    ports:
      - 8080
    links:
      - postgres
      - elasticsearch
    volumes_from:
      - molgenis-data
    environment:
      - "db_uri=jdbc:postgresql://postgres/molgenis?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
      - "db_driver=org.postgresql.Driver"
      - "db_user=molgenis"
      - "db_password=molgenis"
      - "admin.password=admin"
      - "elasticsearch.cluster.name=molgenis"
      - "elasticsearch.transport.addresses=elasticsearch:9300"
    labels:
      io.rancher.sidekicks: molgenis-data
      io.rancher.container.pull_image: always
      io.rancher.scheduler.global: true
      traefik.frontend.rule: Host:${DOMAINS}
      traefik.backend: ${TRAEFIK_BACKEND}
      traefik.enable: true
      traefik.port: 8080

  postgres:
    image: postgres:9.6-alpine
    environment:
      - POSTGRES_USER=molgenis
      - POSTGRES_PASSWORD=molgenis
      - POSTGRES_DB=molgenis
      - PGDATA=/var/lib/postgresql/data/pgdata
    volumes_from:
      - postgres-data
    ports:
      - 5432
    labels:
      io.rancher.sidekicks: postgres-data
      io.rancher.scheduler.global: true

  opencpu:
    image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:stable
    ports:
      - 8004:8004

  elasticsearch:
    image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
    environment:
      - "cluster.name=molgenis"
      - "bootstrap.memory_lock=true"
      - "ES_JAVA_OPTS=-Xms1g -Xmx1g"
      - "xpack.security.enabled=false"
    ulimits:
      memlock:
        soft: -1
        hard: -1
#    volumes_from:
#      - elasticsearch-data
    ports:
       - 9200:9200
       - 9300:9300
    labels:
      #io.rancher.sidekicks: elasticsearch-data
      io.rancher.scheduler.global: true

  postgres-data:
    image: busybox
    labels:
      io.rancher.container.start_once: true
    volumes:
      - /var/lib/postgresql/data/pgdata

  molgenis-data:
    image: busybox
    labels:
      io.rancher.container.start_once: true
    volumes:
      - /opt/molgenis

#  elasticsearch-data:
#    image: busybox
#    labels:
#      io.rancher.container.start_once: true
#    volumes:
#      - /usr/share/elasticsearch/data