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12
README.md
12
README.md
@ -0,0 +1,12 @@
|
||||
# Rancher
|
||||
We use docker-compose.yml files to specify a version-range to deploy a MOLGENIS-stack
|
||||
|
||||
## Configuration
|
||||
|
||||
Exmaple
|
||||
|
||||
```bash
|
||||
molgenis:
|
||||
image: registry.webhosting.rug.nl/molgenis-docker:5.2.0
|
||||
```
|
||||
|
17
templates/jenkins/0/README.md
Normal file
17
templates/jenkins/0/README.md
Normal file
@ -0,0 +1,17 @@
|
||||
# Jenkins for MOLGENIS
|
||||
Flexible software for scientific data
|
||||
|
||||
## Rancher configuration
|
||||
These templates can create a range of MOLGENIS stacks on top of Rancher. The latests and stable release serves 4 docker services:
|
||||
|
||||
- Jenkins
|
||||
- Jenkins Agent - Development tools
|
||||
|
||||
## Usage
|
||||
- Select Jenkins from catalog
|
||||
- Fill in the questions in the template area
|
||||
- Click *Launch*
|
||||
|
||||
## Loadbalancers
|
||||
You can check lb.molgenis.org to check the availabity of the stack.
|
||||
|
41
templates/jenkins/0/docker-compose.yml
Normal file
41
templates/jenkins/0/docker-compose.yml
Normal file
@ -0,0 +1,41 @@
|
||||
version: '2.1'
|
||||
|
||||
services:
|
||||
jenkins-master:
|
||||
image: jenkinsci/blueocean:latest
|
||||
ports:
|
||||
- 8080
|
||||
- 50000
|
||||
volumes:
|
||||
- molgenis-jenkins:/var/jenkins_home
|
||||
restart: always
|
||||
labels:
|
||||
io.rancher.container.pull_image: always
|
||||
traefik.frontend.rule: Host:${DOMAINS}
|
||||
traefik.backend: ${TRAEFIK_BACKEND}
|
||||
traefik.enable: true
|
||||
traefik.port: 8080
|
||||
healthcheck:
|
||||
test: ["CMD", "curl", "-sS", "http://localhost:50000" ]
|
||||
interval: 5s
|
||||
timeout: 10s
|
||||
retries: 5
|
||||
|
||||
jenkins-agent-maven:
|
||||
image: registry.molgenis.org/docker-molgenis-ops-releases/jenkins-agent-buildtools:lts
|
||||
environment:
|
||||
- JENKINS_URL=http://localhost:8080
|
||||
- JENKINS_SECRET=paradoxa
|
||||
- JENKINS_AGENT_NAME=buildtools
|
||||
volumes:
|
||||
- molgenis-jenkins-agent-buildtools:/var/jenkins_home
|
||||
depends_on:
|
||||
jenkins-master:
|
||||
condition: service_healthy
|
||||
restart: always
|
||||
|
||||
volumes:
|
||||
molgenis-jenkins:
|
||||
driver: rancher-nfs
|
||||
molgenis-jenkins-agent-buildtools:
|
||||
driver: rancher-nfs
|
18
templates/jenkins/0/rancher-compose.yml
Normal file
18
templates/jenkins/0/rancher-compose.yml
Normal file
@ -0,0 +1,18 @@
|
||||
.catalog:
|
||||
name: jenkins
|
||||
version: latest
|
||||
description: Jenkins for Molgenis
|
||||
minimum_rancher_version: v1.6.3
|
||||
questions:
|
||||
- variable: "DOMAINS"
|
||||
description: "Domain you want to use (comma seperated)"
|
||||
label: "Domains:"
|
||||
required: true
|
||||
default: "test.molgenis.org,test.dcktest.gcc.rug.nl"
|
||||
type: "string"
|
||||
- variable: "TRAEFIK_BACKEND"
|
||||
description: "Name of the server when added to loadbalancer"
|
||||
label: "Traefik backend:"
|
||||
required: true
|
||||
default: "test.molgenis.org"
|
||||
type: "string"
|
1768
templates/jenkins/catalogIcon-molgenis-jenkins.svg
Normal file
1768
templates/jenkins/catalogIcon-molgenis-jenkins.svg
Normal file
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After Width: | Height: | Size: 133 KiB |
7
templates/jenkins/config.yml
Normal file
7
templates/jenkins/config.yml
Normal file
@ -0,0 +1,7 @@
|
||||
name: Jenkins
|
||||
description: |
|
||||
Jenkins for Molgenis
|
||||
version: v1.0.0
|
||||
category: All
|
||||
maintainer: Molgenis DEVOPS-team
|
||||
projectURL: https://jenkins.io
|
@ -1,17 +1,21 @@
|
||||
# MOLGENIS
|
||||
### Flexible software for scientific data
|
||||
#### Process, manage, query, annotate, integrate, analyse, share
|
||||
Flexible software for scientific data
|
||||
|
||||
This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
||||
## Rancher configuration
|
||||
These templates can create a range of MOLGENIS stacks on top of Rancher. The latests and stable release serves 4 docker services:
|
||||
|
||||
- MOLGENIS instance
|
||||
- Postgress instance
|
||||
- ElasticSearch instance
|
||||
|
||||
## Usage:
|
||||
- MOLGENIS
|
||||
- MOLGENIS-OpenCPU
|
||||
- Postgress
|
||||
- ElasticSearch
|
||||
|
||||
## Usage
|
||||
- Select MOLGENIS from catalog
|
||||
- Enter the name of the replica set
|
||||
- Click deploy
|
||||
- Fill in the questions in the template area
|
||||
- Click *Launch*
|
||||
|
||||
MOLGENIS can now be accessed over the Rancher network on the domains you specified.
|
||||
|
||||
## Loadbalancers
|
||||
You can check lb.molgenis.org to check the availabity of the stack.
|
||||
|
||||
MOLGENIS can now be accessed over the Rancher network.
|
@ -1,22 +1,82 @@
|
||||
app:
|
||||
image: sidohaakma/molgenis-docker:2.0.0
|
||||
ports:
|
||||
- 8081:8080
|
||||
links:
|
||||
- db
|
||||
volumes:
|
||||
- app-data:/opt/molgenis
|
||||
labels:
|
||||
io.rancher.container.create_agent: 'true'
|
||||
io.rancher.scheduler.global: 'true'
|
||||
db:
|
||||
build: ./db
|
||||
expose:
|
||||
- 5432
|
||||
volumes:
|
||||
- db-data:/var/lib/postgresql/data
|
||||
labels:
|
||||
io.rancher.container.create_agent: 'true'
|
||||
version: '2'
|
||||
|
||||
services:
|
||||
molgenis:
|
||||
image: registry.molgenis.org/molgenis/molgenis:latest
|
||||
ports:
|
||||
- 8080
|
||||
links:
|
||||
- postgres
|
||||
- elasticsearch
|
||||
volumes:
|
||||
- molgenis-data:/opt/molgenis
|
||||
environment:
|
||||
- "db_uri=jdbc:postgresql://postgres/${DB_SCHEME}?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
|
||||
- "db_driver=org.postgresql.Driver"
|
||||
- "db_user=${DB_USERNAME}"
|
||||
- "db_password=${DB_PASSWORD}"
|
||||
- "molgenis.home=/opt/molgenis"
|
||||
- "admin.password=${MOLGENIS_ADMIN_PASSWORD}"
|
||||
- "opencpu.uri.port=8004"
|
||||
- "elasticsearch.cluster.name=${ELASTIC_CLUSTER}"
|
||||
- "elasticsearch.transport.addresses=elasticsearch:9300"
|
||||
- "JAVA_OPTS=-Xmx${JVM_MEM_POOL} -Xms${JVM_MEM_POOL} -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled"
|
||||
labels:
|
||||
io.rancher.container.pull_image: always
|
||||
traefik.frontend.rule: Host:${DOMAINS}
|
||||
traefik.backend: ${TRAEFIK_BACKEND}
|
||||
traefik.enable: true
|
||||
traefik.port: 8080
|
||||
|
||||
postgres:
|
||||
image: postgres:9.6-alpine
|
||||
environment:
|
||||
- POSTGRES_USER=${DB_USERNAME}
|
||||
- POSTGRES_PASSWORD=${DB_PASSWORD}
|
||||
- POSTGRES_DB=${DB_SCHEME}
|
||||
- PGDATA=/var/lib/postgresql/data/pgdata
|
||||
volumes:
|
||||
- postgres-data
|
||||
ports:
|
||||
- 5432
|
||||
healthcheck:
|
||||
test: ["CMD", "curl", "sS", "http://localhost:8080"]
|
||||
interval: 5s
|
||||
timeout: 10s
|
||||
retries: 5
|
||||
|
||||
opencpu:
|
||||
image: registry.molgenis.org/molgenis/molgenis-opencpu:latest
|
||||
ports:
|
||||
- 8004
|
||||
healthcheck:
|
||||
test: ["CMD", "curl", "sS", "http://localhost:8084"]
|
||||
interval: 5s
|
||||
timeout: 10s
|
||||
retries: 5
|
||||
|
||||
elasticsearch:
|
||||
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
||||
environment:
|
||||
- "cluster.name=${ELASTIC_CLUSTER}"
|
||||
- "bootstrap.memory_lock=true"
|
||||
- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
|
||||
- "xpack.security.enabled=false"
|
||||
ulimits:
|
||||
memlock:
|
||||
soft: -1
|
||||
hard: -1
|
||||
ports:
|
||||
- 9200
|
||||
- 9300
|
||||
volumes:
|
||||
- elastic-data
|
||||
|
||||
volumes:
|
||||
db-data:
|
||||
app-data:
|
||||
postgres-data:
|
||||
driver: local
|
||||
molgenis-data:
|
||||
driver: local
|
||||
elastic-data:
|
||||
driver: local
|
||||
|
||||
|
@ -1,5 +1,54 @@
|
||||
.catalog:
|
||||
name: molgenis
|
||||
version: v2.0.0
|
||||
version: latest
|
||||
description: Molgenis
|
||||
minimum_rancher_version: v1.6.3
|
||||
questions:
|
||||
- variable: "DOMAINS"
|
||||
description: "Domain you want to use (comma seperated)"
|
||||
label: "Domains:"
|
||||
required: true
|
||||
default: "test.molgenis.org,test.dcktest.gcc.rug.nl"
|
||||
type: "string"
|
||||
- variable: "TRAEFIK_BACKEND"
|
||||
description: "Name of the server when added to loadbalancer"
|
||||
label: "Traefik backend:"
|
||||
required: true
|
||||
default: "test.molgenis.org"
|
||||
type: "string"
|
||||
- variable: "DB_SCHEME"
|
||||
description: "Name of the database scheme"
|
||||
label: "Database scheme:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
- variable: "DB_USERNAME"
|
||||
description: "Name of the database username"
|
||||
label: "Database username:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
- variable: "DB_PASSWORD"
|
||||
description: "Password of the database user"
|
||||
label: "Database password:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
- variable: "MOLGENIS_ADMIN_PASSWORD"
|
||||
description: "Passowrd the MOLGENIS admin"
|
||||
label: "MOLGENIS admin user password:"
|
||||
required: true
|
||||
default: "admin"
|
||||
type: "string"
|
||||
- variable: "ELASTIC_CLUSTER"
|
||||
description: "Name of the elasticsearch cluster"
|
||||
label: "Cluster:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
- variable: "JVM_MEM_POOL"
|
||||
description: "Specifies the initial and maximum size, in bytes, of the memory allocation pool."
|
||||
label: "Initial and maximum size:"
|
||||
required: true
|
||||
default: "2g"
|
||||
type: "string"
|
@ -1,18 +1,21 @@
|
||||
# MOLGENIS
|
||||
**Flexible software for scientific data**
|
||||
Flexible software for scientific data
|
||||
|
||||
|
||||
This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
||||
## Rancher configuration
|
||||
These templates can create a range of MOLGENIS stacks on top of Rancher. The latests and stable release serves 4 docker services:
|
||||
|
||||
- MOLGENIS
|
||||
- Elasticsearch is packaged with MOLGENIS
|
||||
- MOLGENIS-OpenCPU
|
||||
- Postgress
|
||||
- ElasticSearch
|
||||
|
||||
**Usage:**
|
||||
|
||||
|
||||
## Usage
|
||||
- Select MOLGENIS from catalog
|
||||
- The stack-name must not be altered (this is hardcoded in de docker-compose file)
|
||||
- Fill in the questions in the template area
|
||||
- Click *Launch*
|
||||
|
||||
MOLGENIS can now be accessed over the Rancher network.
|
||||
MOLGENIS can now be accessed over the Rancher network on the domains you specified.
|
||||
|
||||
## Loadbalancers
|
||||
You can check lb.molgenis.org to check the availabity of the stack.
|
||||
|
||||
|
@ -1,45 +1,69 @@
|
||||
app:
|
||||
image: sidohaakma/molgenis-docker:4.1.0
|
||||
ports:
|
||||
- 8081:8080
|
||||
links:
|
||||
- db
|
||||
volumes_from:
|
||||
- molgenis-data
|
||||
labels:
|
||||
io.rancher.sidekicks: molgenis-data
|
||||
io.rancher.scheduler.global: true
|
||||
io.rancher.scheduler.affinity:host_label: type=molgenis
|
||||
io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
|
||||
db:
|
||||
version: '2'
|
||||
|
||||
services:
|
||||
molgenis:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis:stable
|
||||
ports:
|
||||
- 8080
|
||||
links:
|
||||
- postgres
|
||||
- elasticsearch
|
||||
volumes:
|
||||
- molgenis-data
|
||||
environment:
|
||||
- "db_uri=jdbc:postgresql://postgres/${DB_SCHEME}?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
|
||||
- "db_driver=org.postgresql.Driver"
|
||||
- "db_user=${DB_USERNAME}"
|
||||
- "db_password=${DB_PASSWORD}"
|
||||
- "admin.password=${MOLGENIS_ADMIN_PASSWORD}"
|
||||
- "elasticsearch.cluster.name=${ELASTIC_CLUSTER}"
|
||||
- "elasticsearch.transport.addresses=elasticsearch:9300"
|
||||
labels:
|
||||
io.rancher.container.pull_image: always
|
||||
traefik.frontend.rule: Host:${DOMAINS}
|
||||
traefik.backend: ${TRAEFIK_BACKEND}
|
||||
traefik.enable: true
|
||||
traefik.port: 8080
|
||||
|
||||
postgres:
|
||||
image: postgres:9.6-alpine
|
||||
environment:
|
||||
- POSTGRES_USER=molgenis
|
||||
- POSTGRES_PASSWORD=molgenis
|
||||
- POSTGRES_DB=molgenis
|
||||
expose:
|
||||
- 5432
|
||||
volumes_from:
|
||||
- POSTGRES_USER=${DB_USERNAME}
|
||||
- POSTGRES_PASSWORD=${DB_PASSWORD}
|
||||
- POSTGRES_DB=${DB_SCHEME}
|
||||
- PGDATA=/var/lib/postgresql/data/pgdata
|
||||
volumes:
|
||||
- postgres-data
|
||||
labels:
|
||||
io.rancher.sidekicks: postgres-data
|
||||
io.rancher.scheduler.global: true
|
||||
io.rancher.scheduler.affinity:host_label: type=molgenis
|
||||
io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
|
||||
ports:
|
||||
- 5432
|
||||
|
||||
postgres-data:
|
||||
image: busybox
|
||||
labels:
|
||||
io.rancher.container.start_once: true
|
||||
io.rancher.scheduler.affinity:host_label: type=molgenis
|
||||
io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
|
||||
opencpu:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:stable
|
||||
ports:
|
||||
- 8004
|
||||
|
||||
elasticsearch:
|
||||
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
||||
environment:
|
||||
- "cluster.name=${ELASTIC_CLUSTER}"
|
||||
- "bootstrap.memory_lock=true"
|
||||
- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
|
||||
- "xpack.security.enabled=false"
|
||||
ulimits:
|
||||
memlock:
|
||||
soft: -1
|
||||
hard: -1
|
||||
ports:
|
||||
- 9200
|
||||
- 9300
|
||||
volumes:
|
||||
- /var/lib/postgresql/data/pgdata
|
||||
- elastic-data
|
||||
|
||||
volumes:
|
||||
postgres-data:
|
||||
driver: local
|
||||
molgenis-data:
|
||||
image: busybox
|
||||
labels:
|
||||
io.rancher.container.start_once: true
|
||||
io.rancher.scheduler.affinity:host_label: type=molgenis
|
||||
io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
|
||||
volumes:
|
||||
- /opt/molgenis
|
||||
driver: local
|
||||
elastic-data:
|
||||
driver: local
|
||||
|
||||
|
@ -1,5 +1,58 @@
|
||||
.catalog:
|
||||
name: molgenis
|
||||
version: v4.1.0
|
||||
version: stable
|
||||
description: Molgenis
|
||||
minimum_rancher_version: v1.6.3
|
||||
questions:
|
||||
- variable: "DOMAINS"
|
||||
description: "Domain you want to use (comma seperated)"
|
||||
label: "Domains:"
|
||||
required: true
|
||||
default: "test.molgenis.org,test.dcktest.gcc.rug.nl"
|
||||
type: "string"
|
||||
- variable: "TRAEFIK_BACKEND"
|
||||
description: "Name of the server when added to loadbalancer"
|
||||
label: "Traefik backend:"
|
||||
required: true
|
||||
default: "test.molgenis.org"
|
||||
type: "string"
|
||||
- variable: "DB_SCHEME"
|
||||
description: "Name of the database scheme"
|
||||
label: "Database scheme:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
- variable: "DB_USERNAME"
|
||||
description: "Name of the database username"
|
||||
label: "Database username:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
- variable: "DB_PASSWORD"
|
||||
description: "Password of the database user"
|
||||
label: "Database password:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
- variable: "MOLGENIS_ADMIN_PASSWORD"
|
||||
description: "Passowrd the MOLGENIS admin"
|
||||
label: "MOLGENIS admin user password:"
|
||||
required: true
|
||||
default: "admin"
|
||||
type: "string"
|
||||
- variable: "ELASTIC_CLUSTER"
|
||||
description: "Name of the elasticsearch cluster"
|
||||
label: "Cluster:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
|
||||
start_on_create: true
|
||||
scale: 1
|
||||
health_check:
|
||||
port: 8080
|
||||
interval: 5000
|
||||
unhealthy_threshold: 3
|
||||
request_line: 'GET / HTTP/1.0'
|
||||
healthy_threshold: 2
|
||||
response_timeout: 5000
|
||||
|
@ -1,18 +1,21 @@
|
||||
# MOLGENIS
|
||||
**Flexible software for scientific data**
|
||||
Flexible software for scientific data
|
||||
|
||||
|
||||
This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
||||
## Rancher configuration
|
||||
These templates can create a range of MOLGENIS stacks on top of Rancher. The latests and stable release serves 4 docker services:
|
||||
|
||||
- MOLGENIS
|
||||
- MOLGENIS-OpenCPU
|
||||
- Postgress
|
||||
- ElasticSearch
|
||||
|
||||
**Usage:**
|
||||
|
||||
|
||||
## Usage
|
||||
- Select MOLGENIS from catalog
|
||||
- The stack-name must not be altered (this is hardcoded in de docker-compose file)
|
||||
- Fill in the questions in the template area
|
||||
- Click *Launch*
|
||||
|
||||
MOLGENIS can now be accessed over the Rancher network.
|
||||
MOLGENIS can now be accessed over the Rancher network on the domains you specified.
|
||||
|
||||
## Loadbalancers
|
||||
You can check lb.molgenis.org to check the availabity of the stack.
|
||||
|
||||
|
@ -1,85 +1,27 @@
|
||||
services:
|
||||
molgenis:
|
||||
image: sidohaakma/molgenis-docker:5.2.0
|
||||
image: registry.webhosting.rug.nl/molgenis:2.0.1
|
||||
ports:
|
||||
- 8081:8080
|
||||
- 8080
|
||||
links:
|
||||
- postgres
|
||||
- elasticsearch
|
||||
volumes_from:
|
||||
- molgenis-data
|
||||
- db
|
||||
volumes:
|
||||
- molgenis-data:/opt/molgenis
|
||||
labels:
|
||||
io.rancher.sidekicks: molgenis-data
|
||||
io.rancher.scheduler.global: true
|
||||
io.rancher.container.pull_image: always
|
||||
io.rancher.scheduler.affinity:host_label: type=molgenis
|
||||
io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
|
||||
postgres:
|
||||
image: postgres:9.6-alpine
|
||||
environment:
|
||||
- POSTGRES_USER=molgenis
|
||||
- POSTGRES_PASSWORD=molgenis
|
||||
- POSTGRES_DB=molgenis
|
||||
- PGDATA=/var/lib/postgresql/data/pgdata
|
||||
volumes_from:
|
||||
- postgres-data
|
||||
ports:
|
||||
- 5432
|
||||
labels:
|
||||
io.rancher.sidekicks: postgres-data
|
||||
io.rancher.scheduler.global: true
|
||||
io.rancher.scheduler.affinity:host_label: type=molgenis
|
||||
io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
|
||||
elasticsearch:
|
||||
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
||||
environment:
|
||||
- "cluster.name=molgenis"
|
||||
- "bootstrap.memory_lock=true"
|
||||
- "ES_JAVA_OPTS=-Xms512m -Xmx512m"
|
||||
- "xpack.security.enabled=false"
|
||||
ulimits:
|
||||
memlock:
|
||||
soft: -1
|
||||
hard: -1
|
||||
# volumes_from:
|
||||
# - elasticsearch-data
|
||||
ports:
|
||||
- 9200:9200
|
||||
- 9300:9300
|
||||
labels:
|
||||
#io.rancher.sidekicks: elasticsearch-data
|
||||
io.rancher.scheduler.global: true
|
||||
io.rancher.scheduler.affinity:host_label: type=molgenis
|
||||
io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
|
||||
# loadbalancer:
|
||||
# image: rancher/lb-service-haproxy:v0.7.5
|
||||
# ports:
|
||||
# - 80
|
||||
# labels:
|
||||
# io.rancher.scheduler.global: true
|
||||
# io.rancher.scheduler.affinity:host_label: type=molgenis
|
||||
# io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
|
||||
traefik.frontend.rule: Host:${DOMAINS}
|
||||
traefik.backend: ${TRAEFIK_BACKEND}
|
||||
traefik.enable: true
|
||||
traefik.port: 8080
|
||||
|
||||
postgres:
|
||||
image: registry.webhosting.rug.nl/molgenis-postgres:2.0.1
|
||||
expose:
|
||||
- 5432
|
||||
volumes:
|
||||
- postgres-data:/var/lib/postgresql/data
|
||||
|
||||
volumes:
|
||||
postgres-data:
|
||||
image: busybox
|
||||
labels:
|
||||
io.rancher.container.start_once: true
|
||||
io.rancher.scheduler.affinity:host_label: type=molgenis
|
||||
io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
|
||||
volumes:
|
||||
- /var/lib/postgresql/data/pgdata
|
||||
driver: local
|
||||
molgenis-data:
|
||||
image: busybox
|
||||
labels:
|
||||
io.rancher.container.start_once: true
|
||||
io.rancher.scheduler.affinity:host_label: type=molgenis
|
||||
io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
|
||||
volumes:
|
||||
- /opt/molgenis
|
||||
# elasticsearch-data:
|
||||
# image: busybox
|
||||
# labels:
|
||||
# io.rancher.container.start_once: true
|
||||
# io.rancher.scheduler.affinity:host_label: type=molgenis
|
||||
# io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
|
||||
# volumes:
|
||||
# - /usr/share/elasticsearch/data
|
||||
driver: local
|
@ -1,18 +1,28 @@
|
||||
.catalog:
|
||||
name: molgenis
|
||||
version: v5.0.0
|
||||
version: v2.0.0
|
||||
description: Molgenis
|
||||
minimum_rancher_version: v1.6.3
|
||||
#loadbalancer:
|
||||
# scale: 1
|
||||
# lb_config:
|
||||
# port_rules:
|
||||
# - source_port: 80
|
||||
# target_port: 8081
|
||||
# service: molgenis
|
||||
# health_check:
|
||||
# port: 42
|
||||
# interval: 2000
|
||||
# unhealthy_threshold: 3
|
||||
# healthy_threshold: 2
|
||||
# response_timeout: 2000
|
||||
questions:
|
||||
- variable: "DOMAINS"
|
||||
description: "Domain you want to use (comma seperated)"
|
||||
label: "Domains:"
|
||||
required: true
|
||||
default: "test.molgenis.org,test.dcktest.gcc.rug.nl"
|
||||
type: "string"
|
||||
- variable: "TRAEFIK_BACKEND"
|
||||
description: "Name of the server when added to loadbalancer"
|
||||
label: "Traefik backend:"
|
||||
required: true
|
||||
default: "test.molgenis.org"
|
||||
type: "string"
|
||||
|
||||
start_on_create: true
|
||||
scale: 1
|
||||
health_check:
|
||||
port: 8080
|
||||
interval: 5000
|
||||
unhealthy_threshold: 3
|
||||
request_line: 'GET / HTTP/1.0'
|
||||
healthy_threshold: 2
|
||||
response_timeout: 5000
|
17
templates/molgenis/3/README.md
Normal file
17
templates/molgenis/3/README.md
Normal file
@ -0,0 +1,17 @@
|
||||
# MOLGENIS
|
||||
|
||||
Flexible software for scientific data
|
||||
|
||||
## Rancher configuration
|
||||
This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
||||
|
||||
- MOLGENIS
|
||||
- Elasticsearch is packaged with MOLGENIS
|
||||
- Postgress
|
||||
|
||||
## Usage
|
||||
- Select MOLGENIS from catalog
|
||||
- The stack-name must not be altered (this is hardcoded in de docker-compose file)
|
||||
- Click *Launch*
|
||||
|
||||
MOLGENIS can now be accessed over the Rancher network.
|
32
templates/molgenis/3/docker-compose.yml
Normal file
32
templates/molgenis/3/docker-compose.yml
Normal file
@ -0,0 +1,32 @@
|
||||
version: '2'
|
||||
services:
|
||||
molgenis:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis:4.1.0
|
||||
ports:
|
||||
- 8080
|
||||
links:
|
||||
- postgres
|
||||
volumes:
|
||||
- molgenis-data
|
||||
labels:
|
||||
traefik.frontend.rule: Host:${DOMAINS}
|
||||
traefik.backend: ${TRAEFIK_BACKEND}
|
||||
traefik.enable: true
|
||||
traefik.port: 8080
|
||||
|
||||
postgres:
|
||||
image: postgres:9.6-alpine
|
||||
environment:
|
||||
- POSTGRES_USER=molgenis
|
||||
- POSTGRES_PASSWORD=molgenis
|
||||
- POSTGRES_DB=molgenis
|
||||
expose:
|
||||
- 5432
|
||||
volumes:
|
||||
- postgres-data
|
||||
|
||||
volumes:
|
||||
molgenis-data:
|
||||
driver: local
|
||||
postgres-data:
|
||||
driver: local
|
28
templates/molgenis/3/rancher-compose.yml
Normal file
28
templates/molgenis/3/rancher-compose.yml
Normal file
@ -0,0 +1,28 @@
|
||||
.catalog:
|
||||
name: molgenis
|
||||
version: v4.1.0
|
||||
description: Molgenis
|
||||
minimum_rancher_version: v1.6.3
|
||||
questions:
|
||||
- variable: "DOMAINS"
|
||||
description: "Domain you want to use (comma seperated)"
|
||||
label: "Domains:"
|
||||
required: true
|
||||
default: "test.molgenis.org,test.dcktest.gcc.rug.nl"
|
||||
type: "string"
|
||||
- variable: "TRAEFIK_BACKEND"
|
||||
description: "Name of the server when added to loadbalancer"
|
||||
label: "Traefik backend:"
|
||||
required: true
|
||||
default: "test.molgenis.org"
|
||||
type: "string"
|
||||
|
||||
start_on_create: true
|
||||
scale: 1
|
||||
health_check:
|
||||
port: 8080
|
||||
interval: 5000
|
||||
unhealthy_threshold: 3
|
||||
request_line: 'GET / HTTP/1.0'
|
||||
healthy_threshold: 2
|
||||
response_timeout: 5000
|
21
templates/molgenis/4/README.md
Normal file
21
templates/molgenis/4/README.md
Normal file
@ -0,0 +1,21 @@
|
||||
# MOLGENIS
|
||||
Flexible software for scientific data
|
||||
|
||||
## Rancher configuration
|
||||
These templates can create a range of MOLGENIS stacks on top of Rancher. The latests and stable release serves 4 docker services:
|
||||
|
||||
- MOLGENIS
|
||||
- MOLGENIS-OpenCPU
|
||||
- Postgress
|
||||
- ElasticSearch
|
||||
|
||||
## Usage
|
||||
- Select MOLGENIS from catalog
|
||||
- Fill in the questions in the template area
|
||||
- Click *Launch*
|
||||
|
||||
MOLGENIS can now be accessed over the Rancher network on the domains you specified.
|
||||
|
||||
## Loadbalancers
|
||||
You can check lb.molgenis.org to check the availabity of the stack.
|
||||
|
68
templates/molgenis/4/docker-compose.yml
Normal file
68
templates/molgenis/4/docker-compose.yml
Normal file
@ -0,0 +1,68 @@
|
||||
version: '2'
|
||||
|
||||
services:
|
||||
molgenis:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis:5.2.0
|
||||
ports:
|
||||
- 8080
|
||||
links:
|
||||
- postgres
|
||||
- elasticsearch
|
||||
volumes:
|
||||
- molgenis-data
|
||||
environment:
|
||||
- "db_uri=jdbc:postgresql://postgres/${DB_SCHEME}?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
|
||||
- "db_driver=org.postgresql.Driver"
|
||||
- "db_user=${DB_USERNAME}"
|
||||
- "db_password=${DB_PASSWORD}"
|
||||
- "admin.password=${MOLGENIS_ADMIN_PASSWORD}"
|
||||
- "elasticsearch.cluster.name=${ELASTIC_CLUSTER}"
|
||||
- "elasticsearch.transport.addresses=elasticsearch:9300"
|
||||
labels:
|
||||
io.rancher.container.pull_image: always
|
||||
traefik.frontend.rule: Host:${DOMAINS}
|
||||
traefik.backend: ${TRAEFIK_BACKEND}
|
||||
traefik.enable: true
|
||||
traefik.port: 8080
|
||||
|
||||
postgres:
|
||||
image: postgres:9.6-alpine
|
||||
environment:
|
||||
- POSTGRES_USER=${DB_USERNAME}
|
||||
- POSTGRES_PASSWORD=${DB_PASSWORD}
|
||||
- POSTGRES_DB=${DB_SCHEME}
|
||||
- PGDATA=/var/lib/postgresql/data/pgdata
|
||||
volumes:
|
||||
- postgres-data
|
||||
ports:
|
||||
- 5432
|
||||
|
||||
opencpu:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:5.2.0
|
||||
ports:
|
||||
- 8004
|
||||
|
||||
elasticsearch:
|
||||
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
||||
environment:
|
||||
- "cluster.name=${ELASTIC_CLUSTER}"
|
||||
- "bootstrap.memory_lock=true"
|
||||
- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
|
||||
- "xpack.security.enabled=false"
|
||||
ulimits:
|
||||
memlock:
|
||||
soft: -1
|
||||
hard: -1
|
||||
ports:
|
||||
- 9200
|
||||
- 9300
|
||||
volumes:
|
||||
- elastic-data
|
||||
|
||||
volumes:
|
||||
postgres-data:
|
||||
driver: local
|
||||
molgenis-data:
|
||||
driver: local
|
||||
elastic-data:
|
||||
driver: local
|
58
templates/molgenis/4/rancher-compose.yml
Normal file
58
templates/molgenis/4/rancher-compose.yml
Normal file
@ -0,0 +1,58 @@
|
||||
.catalog:
|
||||
name: molgenis
|
||||
version: v5.2.0
|
||||
description: Molgenis
|
||||
minimum_rancher_version: v1.6.3
|
||||
questions:
|
||||
- variable: "DOMAINS"
|
||||
description: "Domain you want to use (comma seperated)"
|
||||
label: "Domains:"
|
||||
required: true
|
||||
default: "test.molgenis.org,test.dcktest.gcc.rug.nl"
|
||||
type: "string"
|
||||
- variable: "TRAEFIK_BACKEND"
|
||||
description: "Name of the server when added to loadbalancer"
|
||||
label: "Traefik backend:"
|
||||
required: true
|
||||
default: "test.molgenis.org"
|
||||
type: "string"
|
||||
- variable: "DB_SCHEME"
|
||||
description: "Name of the database scheme"
|
||||
label: "Database scheme:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
- variable: "DB_USERNAME"
|
||||
description: "Name of the database username"
|
||||
label: "Database username:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
- variable: "DB_PASSWORD"
|
||||
description: "Password of the database user"
|
||||
label: "Database password:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
- variable: "MOLGENIS_ADMIN_PASSWORD"
|
||||
description: "Passowrd the MOLGENIS admin"
|
||||
label: "MOLGENIS admin user password:"
|
||||
required: true
|
||||
default: "admin"
|
||||
type: "string"
|
||||
- variable: "ELASTIC_CLUSTER"
|
||||
description: "Name of the elasticsearch cluster"
|
||||
label: "Cluster:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
|
||||
start_on_create: true
|
||||
scale: 1
|
||||
health_check:
|
||||
port: 8080
|
||||
interval: 5000
|
||||
unhealthy_threshold: 3
|
||||
request_line: 'GET / HTTP/1.0'
|
||||
healthy_threshold: 2
|
||||
response_timeout: 5000
|
21
templates/molgenis/5/README.md
Normal file
21
templates/molgenis/5/README.md
Normal file
@ -0,0 +1,21 @@
|
||||
# MOLGENIS
|
||||
Flexible software for scientific data
|
||||
|
||||
## Rancher configuration
|
||||
These templates can create a range of MOLGENIS stacks on top of Rancher. The latests and stable release serves 4 docker services:
|
||||
|
||||
- MOLGENIS
|
||||
- MOLGENIS-OpenCPU
|
||||
- Postgress
|
||||
- ElasticSearch
|
||||
|
||||
## Usage
|
||||
- Select MOLGENIS from catalog
|
||||
- Fill in the questions in the template area
|
||||
- Click *Launch*
|
||||
|
||||
MOLGENIS can now be accessed over the Rancher network on the domains you specified.
|
||||
|
||||
## Loadbalancers
|
||||
You can check lb.molgenis.org to check the availabity of the stack.
|
||||
|
68
templates/molgenis/5/docker-compose.yml
Normal file
68
templates/molgenis/5/docker-compose.yml
Normal file
@ -0,0 +1,68 @@
|
||||
version: '2'
|
||||
|
||||
services:
|
||||
molgenis:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis:6.0.0
|
||||
ports:
|
||||
- 8080
|
||||
links:
|
||||
- postgres
|
||||
- elasticsearch
|
||||
volumes:
|
||||
- molgenis-data
|
||||
environment:
|
||||
- "db_uri=jdbc:postgresql://postgres/${DB_SCHEME}?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
|
||||
- "db_driver=org.postgresql.Driver"
|
||||
- "db_user=${DB_USERNAME}"
|
||||
- "db_password=${DB_PASSWORD}"
|
||||
- "admin.password=${MOLGENIS_ADMIN_PASSWORD}"
|
||||
- "elasticsearch.cluster.name=${ELASTIC_CLUSTER}"
|
||||
- "elasticsearch.transport.addresses=elasticsearch:9300"
|
||||
labels:
|
||||
io.rancher.container.pull_image: always
|
||||
traefik.frontend.rule: Host:${DOMAINS}
|
||||
traefik.backend: ${TRAEFIK_BACKEND}
|
||||
traefik.enable: true
|
||||
traefik.port: 8080
|
||||
|
||||
postgres:
|
||||
image: postgres:9.6-alpine
|
||||
environment:
|
||||
- POSTGRES_USER=${DB_USERNAME}
|
||||
- POSTGRES_PASSWORD=${DB_PASSWORD}
|
||||
- POSTGRES_DB=${DB_SCHEME}
|
||||
- PGDATA=/var/lib/postgresql/data/pgdata
|
||||
volumes:
|
||||
- postgres-data
|
||||
ports:
|
||||
- 5432
|
||||
|
||||
opencpu:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:6.0.0
|
||||
ports:
|
||||
- 8004
|
||||
|
||||
elasticsearch:
|
||||
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
||||
environment:
|
||||
- "cluster.name=${ELASTIC_CLUSTER}"
|
||||
- "bootstrap.memory_lock=true"
|
||||
- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
|
||||
- "xpack.security.enabled=false"
|
||||
ulimits:
|
||||
memlock:
|
||||
soft: -1
|
||||
hard: -1
|
||||
ports:
|
||||
- 9200
|
||||
- 9300
|
||||
volumes:
|
||||
- elastic-data
|
||||
|
||||
volumes:
|
||||
postgres-data:
|
||||
driver: local
|
||||
molgenis-data:
|
||||
driver: local
|
||||
elastic-data:
|
||||
driver: local
|
58
templates/molgenis/5/rancher-compose.yml
Normal file
58
templates/molgenis/5/rancher-compose.yml
Normal file
@ -0,0 +1,58 @@
|
||||
.catalog:
|
||||
name: molgenis
|
||||
version: v6.0.0
|
||||
description: Molgenis
|
||||
minimum_rancher_version: v1.6.3
|
||||
questions:
|
||||
- variable: "DOMAINS"
|
||||
description: "Domain you want to use (comma seperated)"
|
||||
label: "Domains:"
|
||||
required: true
|
||||
default: "test.molgenis.org,test.dcktest.gcc.rug.nl"
|
||||
type: "string"
|
||||
- variable: "TRAEFIK_BACKEND"
|
||||
description: "Name of the server when added to loadbalancer"
|
||||
label: "Traefik backend:"
|
||||
required: true
|
||||
default: "test.molgenis.org"
|
||||
type: "string"
|
||||
- variable: "DB_SCHEME"
|
||||
description: "Name of the database scheme"
|
||||
label: "Database scheme:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
- variable: "DB_USERNAME"
|
||||
description: "Name of the database username"
|
||||
label: "Database username:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
- variable: "DB_PASSWORD"
|
||||
description: "Password of the database user"
|
||||
label: "Database password:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
- variable: "MOLGENIS_ADMIN_PASSWORD"
|
||||
description: "Passowrd the MOLGENIS admin"
|
||||
label: "MOLGENIS admin user password:"
|
||||
required: true
|
||||
default: "admin"
|
||||
type: "string"
|
||||
- variable: "ELASTIC_CLUSTER"
|
||||
description: "Name of the elasticsearch cluster"
|
||||
label: "Cluster:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
|
||||
start_on_create: true
|
||||
scale: 1
|
||||
health_check:
|
||||
port: 8080
|
||||
interval: 5000
|
||||
unhealthy_threshold: 3
|
||||
request_line: 'GET / HTTP/1.0'
|
||||
healthy_threshold: 2
|
||||
response_timeout: 5000
|
21
templates/molgenis/6/README.md
Normal file
21
templates/molgenis/6/README.md
Normal file
@ -0,0 +1,21 @@
|
||||
# MOLGENIS
|
||||
Flexible software for scientific data
|
||||
|
||||
## Rancher configuration
|
||||
These templates can create a range of MOLGENIS stacks on top of Rancher. The latests and stable release serves 4 docker services:
|
||||
|
||||
- MOLGENIS
|
||||
- MOLGENIS-OpenCPU
|
||||
- Postgress
|
||||
- ElasticSearch
|
||||
|
||||
## Usage
|
||||
- Select MOLGENIS from catalog
|
||||
- Fill in the questions in the template area
|
||||
- Click *Launch*
|
||||
|
||||
MOLGENIS can now be accessed over the Rancher network on the domains you specified.
|
||||
|
||||
## Loadbalancers
|
||||
You can check lb.molgenis.org to check the availabity of the stack.
|
||||
|
68
templates/molgenis/6/docker-compose.yml
Normal file
68
templates/molgenis/6/docker-compose.yml
Normal file
@ -0,0 +1,68 @@
|
||||
version: '2'
|
||||
|
||||
services:
|
||||
molgenis:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis:7.0.0
|
||||
ports:
|
||||
- 8080
|
||||
links:
|
||||
- postgres
|
||||
- elasticsearch
|
||||
volumes:
|
||||
- molgenis-data
|
||||
environment:
|
||||
- "db_uri=jdbc:postgresql://postgres/${DB_SCHEME}?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
|
||||
- "db_driver=org.postgresql.Driver"
|
||||
- "db_user=${DB_USERNAME}"
|
||||
- "db_password=${DB_PASSWORD}"
|
||||
- "admin.password=${MOLGENIS_ADMIN_PASSWORD}"
|
||||
- "elasticsearch.cluster.name=${ELASTIC_CLUSTER}"
|
||||
- "elasticsearch.transport.addresses=elasticsearch:9300"
|
||||
labels:
|
||||
io.rancher.container.pull_image: always
|
||||
traefik.frontend.rule: Host:${DOMAINS}
|
||||
traefik.backend: ${TRAEFIK_BACKEND}
|
||||
traefik.enable: true
|
||||
traefik.port: 8080
|
||||
|
||||
postgres:
|
||||
image: postgres:9.6-alpine
|
||||
environment:
|
||||
- POSTGRES_USER=${DB_USERNAME}
|
||||
- POSTGRES_PASSWORD=${DB_PASSWORD}
|
||||
- POSTGRES_DB=${DB_SCHEME}
|
||||
- PGDATA=/var/lib/postgresql/data/pgdata
|
||||
volumes:
|
||||
- postgres-data
|
||||
ports:
|
||||
- 5432
|
||||
|
||||
opencpu:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:7.0.0
|
||||
ports:
|
||||
- 8004
|
||||
|
||||
elasticsearch:
|
||||
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
||||
environment:
|
||||
- "cluster.name=${ELASTIC_CLUSTER}"
|
||||
- "bootstrap.memory_lock=true"
|
||||
- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
|
||||
- "xpack.security.enabled=false"
|
||||
ulimits:
|
||||
memlock:
|
||||
soft: -1
|
||||
hard: -1
|
||||
ports:
|
||||
- 9200
|
||||
- 9300
|
||||
volumes:
|
||||
- elastic-data
|
||||
|
||||
volumes:
|
||||
postgres-data:
|
||||
driver: local
|
||||
molgenis-data:
|
||||
driver: local
|
||||
elastic-data:
|
||||
driver: local
|
58
templates/molgenis/6/rancher-compose.yml
Normal file
58
templates/molgenis/6/rancher-compose.yml
Normal file
@ -0,0 +1,58 @@
|
||||
.catalog:
|
||||
name: molgenis
|
||||
version: v7.0.0
|
||||
description: Molgenis
|
||||
minimum_rancher_version: v1.6.3
|
||||
questions:
|
||||
- variable: "DOMAINS"
|
||||
description: "Domain you want to use (comma seperated)"
|
||||
label: "Domains:"
|
||||
required: true
|
||||
default: "test.molgenis.org,test.dcktest.gcc.rug.nl"
|
||||
type: "string"
|
||||
- variable: "TRAEFIK_BACKEND"
|
||||
description: "Name of the server when added to loadbalancer"
|
||||
label: "Traefik backend:"
|
||||
required: true
|
||||
default: "test.molgenis.org"
|
||||
type: "string"
|
||||
- variable: "DB_SCHEME"
|
||||
description: "Name of the database scheme"
|
||||
label: "Database scheme:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
- variable: "DB_USERNAME"
|
||||
description: "Name of the database username"
|
||||
label: "Database username:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
- variable: "DB_PASSWORD"
|
||||
description: "Password of the database user"
|
||||
label: "Database password:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
- variable: "MOLGENIS_ADMIN_PASSWORD"
|
||||
description: "Passowrd the MOLGENIS admin"
|
||||
label: "MOLGENIS admin user password:"
|
||||
required: true
|
||||
default: "admin"
|
||||
type: "string"
|
||||
- variable: "ELASTIC_CLUSTER"
|
||||
description: "Name of the elasticsearch cluster"
|
||||
label: "Cluster:"
|
||||
required: true
|
||||
default: "molgenis"
|
||||
type: "string"
|
||||
|
||||
start_on_create: true
|
||||
scale: 1
|
||||
health_check:
|
||||
port: 8080
|
||||
interval: 5000
|
||||
unhealthy_threshold: 3
|
||||
request_line: 'GET / HTTP/1.0'
|
||||
healthy_threshold: 2
|
||||
response_timeout: 5000
|
@ -1,7 +1,7 @@
|
||||
name: Molgenis
|
||||
description: |
|
||||
Molgenis | Flexible software for scientific data
|
||||
version: v5.0.0
|
||||
version: latest
|
||||
category: All
|
||||
maintainer: Molgenis DEV-team and community-members
|
||||
projectURL: http://molgenis.org
|
||||
projectURL: https://www.molgenis.org
|
16
templates/nexus/0/README.md
Normal file
16
templates/nexus/0/README.md
Normal file
@ -0,0 +1,16 @@
|
||||
# Nexus for MOLGENIS
|
||||
Flexible software for scientific data
|
||||
|
||||
## Rancher configuration
|
||||
These templates can create a range of MOLGENIS stacks on top of Rancher. The latests and stable release serves 4 docker services:
|
||||
|
||||
- Nexus
|
||||
|
||||
## Usage
|
||||
- Select Nexus from catalog
|
||||
- Fill in the questions in the template area
|
||||
- Click *Launch*
|
||||
|
||||
## Loadbalancers
|
||||
You can check lb.molgenis.org to check the availability of the stack.
|
||||
|
20
templates/nexus/0/docker-compose.yml
Normal file
20
templates/nexus/0/docker-compose.yml
Normal file
@ -0,0 +1,20 @@
|
||||
version: '2'
|
||||
|
||||
services:
|
||||
nexus:
|
||||
image: sonatype/nexus3:latest
|
||||
ports:
|
||||
- 8081
|
||||
- 5000
|
||||
volumes:
|
||||
- molgenis-nexus-data:/nexus-data
|
||||
labels:
|
||||
io.rancher.container.pull_image: always
|
||||
traefik.frontend.rule: Host:${DOMAINS}
|
||||
traefik.backend: ${TRAEFIK_BACKEND}
|
||||
traefik.enable: true
|
||||
traefik.port: 8081
|
||||
|
||||
volumes:
|
||||
molgenis-nexus-data:
|
||||
driver: rancher-nfs
|
28
templates/nexus/0/rancher-compose.yml
Normal file
28
templates/nexus/0/rancher-compose.yml
Normal file
@ -0,0 +1,28 @@
|
||||
.catalog:
|
||||
name: nexus
|
||||
version: latest
|
||||
description: Nexus for Molgenis
|
||||
minimum_rancher_version: v1.6.3
|
||||
questions:
|
||||
- variable: "DOMAINS"
|
||||
description: "Domain you want to use (comma seperated)"
|
||||
label: "Domains:"
|
||||
required: true
|
||||
default: "test.molgenis.org,test.dcktest.gcc.rug.nl"
|
||||
type: "string"
|
||||
- variable: "TRAEFIK_BACKEND"
|
||||
description: "Name of the server when added to loadbalancer"
|
||||
label: "Traefik backend:"
|
||||
required: true
|
||||
default: "test.molgenis.org"
|
||||
type: "string"
|
||||
|
||||
start_on_create: true
|
||||
scale: 1
|
||||
health_check:
|
||||
port: 8080
|
||||
interval: 5000
|
||||
unhealthy_threshold: 3
|
||||
request_line: 'GET / HTTP/1.0'
|
||||
healthy_threshold: 2
|
||||
response_timeout: 5000
|
551
templates/nexus/catalogIcon-molgenis-nexus.svg
Normal file
551
templates/nexus/catalogIcon-molgenis-nexus.svg
Normal file
@ -0,0 +1,551 @@
|
||||
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
|
||||
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
|
||||
<svg version="1.1" id="Layer_1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" x="0px" y="0px" width="500px" height="264px" viewBox="0 0 500 264" enable-background="new 0 0 500 264" xml:space="preserve"> <image id="image0" width="500" height="264" x="0" y="0"
|
||||
xlink:href="data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAfQAAAEICAIAAAAm5JG/AAAABGdBTUEAALGPC/xhBQAAACBjSFJN
|
||||
AAB6JgAAgIQAAPoAAACA6AAAdTAAAOpgAAA6mAAAF3CculE8AAAABmJLR0QA/wD/AP+gvaeTAAAA
|
||||
CXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH4gQKFAE5UFTkaAAAeI5JREFUeNrtnXd8FMUXwGfb
|
||||
9bv0hHRSCQmkAUmA0BFEFJEmoAIWREVQlN5BBUQExIKKDVFEEFAQVBDkRw8ttEAgAUJ6b5dc3fL7
|
||||
Y+E4Llf2Su6SMN8Pn+OyO/t2du7u7ds3b95DGIYBEAgEAmlboK7uAAQCgUAcD1TuEAgE0gaByh0C
|
||||
gUDaIFC5QyAQSBsEKncIBAJpg0DlDoFAIG0QqNwhEAikDQKVOwQCgbRBoHKHQCCQNghU7hAIBNIG
|
||||
gcodAoFA2iBQuUMgEEgbBCp3CAQCaYNA5Q6BQCBtEKjcIRAIpA0ClTsEAoG0QaByh0AgkDYIVO4Q
|
||||
CATSBoHKHQKBQNogULlDIBBIGwQqdwgEAmmDQOUOgUAgbRCo3CEQCKQNApU7BAKBtEGgcodAIJA2
|
||||
CFTuEAgE0gbBXd0BSItmX3b1xoziehUlV1NKkmKYB7sQBIgInGEYAAAfRxAE+WBQ+/4R7q7ucuuG
|
||||
HU8EAYABAGHslgdxBQwCEAAAwjAMgiCu6gXCMPALBDGCmqR/v1Y19pfrVh118OXOAyM9XN33VglN
|
||||
MygKauWKvNLagor6RqUW/jZbKTwC9XUTt/f3CPSRoQgKXKTfoXKHGEGhpQNXnK5VkTYc++8rnQdE
|
||||
QP1uBQzDMAyDoujek9e++vNieW2jSkvRNPxhtlYQBBAYJhXxkiP91r7+GEBQBHGBAxwqd4gRJEtO
|
||||
NGoomw+/MC05KUDi6otoNVAURZLkpn0X1uw86yUVuLo7EIehpeggL8nm2U96yiQohjnZRQMnVCGG
|
||||
BK3MsEezAwCSP71Q2ah19XW0AhiGoWmapsiz1wu++fsS1OxtDAJDi6sbp312AMMxmqKdfHao3CEP
|
||||
caZAXlSvtl9O3Ppzrr6U1gFN0xhCv7bhAOqKJ3dIc4OhyMU7FV/+kcEwFE07Vb/D7xPkIdK/uugQ
|
||||
OeUN2u/Olbr6alo6DMMwNLlxzwUGcWFUBaR5EfOJgxfyauWNULlDXMadapWWctgczJt7cl19QS0d
|
||||
hmGUSvXlvHIeBn+JbZmaelVVbQNFUc6c44RfKcg9SJqJ/+S8AwUqtc52MrY6KIpSabTVcjWKQru9
|
||||
LaMiqUalGip3iGtQaukG++ZRm/La7zmuvqwWDU3TNE1iCIAha20bFACGoSjKwb8viyeFQAAAoFrp
|
||||
+PiWb89Ct7sFMATxcxPAqPa2jZCP8Z3ueYPKHXKPknrHK3eSZhTQOWMWDEW7d/BWaZ1q00GcCc0w
|
||||
AR5CqYgH49whrkFNNosWzqlUuPrKWi4YhgEU6xnj1z3Sk3TcVDakRVGn0E7oFcrnERiGOfO8MHFY
|
||||
W4Nm1LdKPy6r30vRjQAAmSgpxv89IS/E4oFM8zh+ocoyA4IgBEFQKG9Sn7A7FVfrlCQKIyLbFhTN
|
||||
vDEgNCrIi+DxURRFUefZ01C5txHUZHlOyXv1yktaqh6ABzZ4vSLzzK2nMFQkE3YO8X7VXdTVlAQB
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||||
</svg>
|
After Width: | Height: | Size: 42 KiB |
7
templates/nexus/config.yml
Normal file
7
templates/nexus/config.yml
Normal file
@ -0,0 +1,7 @@
|
||||
name: Nexus
|
||||
description: |
|
||||
Nexus for Molgenis
|
||||
version: v1.0.0
|
||||
category: All
|
||||
maintainer: Molgenis DEVOPS-team
|
||||
projectURL: https://www.sonatype.com/nexus-repository-oss
|
Loading…
Reference in New Issue
Block a user