AMR/R/globals.R

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# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
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# SOURCE #
# https://gitlab.com/msberends/AMR #
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# #
# LICENCE #
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# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
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# #
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# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# #
# This R package was created for academic research and was publicly #
# released in the hope that it will be useful, but it comes WITHOUT #
# ANY WARRANTY OR LIABILITY. #
# Visit our website for more info: https://msberends.gitab.io/AMR. #
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# ==================================================================== #
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globalVariables(c(".",
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"..property",
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"antibiotic",
"Antibiotic",
"antibiotics",
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"atc",
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"authors",
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"Becker",
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"certe",
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"cnt",
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"col_id",
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"count",
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"count.x",
"count.y",
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"cum_count",
"cum_percent",
"date_lab",
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"diff.percent",
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"fctlvl",
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"First name",
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"first_isolate_row_index",
"Freq",
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"fullname",
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"fullname_lower",
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"genus",
"gramstain",
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"index",
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"Interpretation",
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"input",
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"item",
"key_ab",
"key_ab_lag",
"key_ab_other",
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"kingdom",
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"labs",
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"Lancefield",
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"Last name",
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"lbl",
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"median",
"mic",
"microorganisms",
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"microorganisms.codes",
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"microorganisms.old",
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"microorganisms.oldDT",
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"microorganisms.prevDT",
"microorganisms.unprevDT",
"microorganismsDT",
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"mo",
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"mo.old",
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"more_than_episode_ago",
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"n",
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"name",
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"observations",
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"observed",
"official",
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"other_pat_or_mo",
"Pasted",
"patient_id",
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"phylum",
"prevalence",
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"prevalent",
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"psae",
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"R",
"real_first_isolate",
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"ref",
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"S",
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"se_max",
"se_min",
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"septic_patients",
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"Sex",
"shortname",
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"species",
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"superprevalent",
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"trade_name",
"transmute",
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"tsn",
"tsn_new",
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"umcg",
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"value",
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"Value",
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"y",
"year"))