cead31bed0
prepare for morphology
2026-05-04 22:57:42 +02:00
a5e8beff69
prepare for documentation
2026-05-03 11:50:05 +02:00
Claude
9707450b89
Fix emend. author bug in get_author_year() and update ref documentation
...
Strip emend. and everything after it so the ref column retains the
combination authority, not the emendation author. Update data.R and
mo_property.R docs to describe the correct semantics of the ref field.
https://claude.ai/code/session_01VH4Ju4Xq9aW1AHuoVbjGEo
2026-05-02 14:34:45 +00:00
Matthijs Berends
8ff5d4472a
Add add_if_missing parameter to control NA handling in interpretive rules ( #264 )
2026-04-21 21:53:43 +02:00
cfbbfb4fa5
(v3.0.1.9007) fix #246
2026-01-06 23:08:50 +01:00
151af21f38
(v3.0.1.9005) re-add tidymodels implementation
2025-12-21 12:19:43 +01:00
3ba1b8a10a
(v3.0.0.9022) postpone new features - we like a clearly focussed bugfix release first
2025-09-03 15:39:44 +02:00
72db2b2562
(v3.0.0.9003) eucast_rules fix, new tidymodels integration
2025-06-13 14:03:21 +02:00
d384b492cf
(v2.1.1.9289) unit test fix
2025-06-01 16:00:12 +02:00
dc5559a2c4
(v2.1.1.9270) Add support for Korean, fix ATCs
2025-05-04 14:24:43 +02:00
5e6bbdf3d1
(v2.1.1.9267) update ATCs
2025-05-01 11:48:49 +02:00
40d7a971c3
(v2.1.1.9236) documentation
2025-04-12 11:46:42 +02:00
36fd99e1f4
(v2.1.1.9235) New website!
2025-04-08 15:54:30 +01:00
b972bbb96f
(v2.1.1.9230) deprecated resistance_predict(), data set folder name without space
2025-03-28 16:48:56 +01:00
49da312506
(v2.1.1.9228) repo cleaning
2025-03-28 11:17:49 +01:00
969a42cc8c
(v2.1.1.9226) update intrinsic_resistant, unit test fixes
2025-03-27 15:20:22 +01:00
e134e01418
(v2.1.1.9198) support eucast expert rules 14 and 13.1
2025-03-14 10:10:35 +01:00
a7ef22a21e
(v2.1.1.9194) new argument for missing R breakpoints - updated from WHONET
2025-03-12 16:24:38 +01:00
b67613ce08
(v2.1.1.9187) WISCA fix
2025-03-07 22:27:21 +01:00
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
07efc292bc
(v2.1.1.9163) cleanup
2025-02-27 14:04:29 +01:00
ac1c40d8bb
(v2.1.1.9081) HUGE microorganisms update for fungi!
2024-09-29 22:17:56 +02:00
1ca40e8d67
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
640888f408
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
c67d003e9e
(v2.1.1.9060) SDD results now in as.sir()
2024-06-19 15:08:23 +02:00
a4dc37a4e4
(v2.1.1.9057) fix for missing breakpoints
2024-06-17 16:52:12 +02:00
08a27922a8
new SDD and N for as.sir()
2024-05-20 15:27:04 +02:00
bc4f8515e2
new Norwegian link
2024-03-03 23:24:57 +01:00
7be4dabbc0
support veterinary MIC/disk translation
2024-02-24 15:16:52 +01:00
7cda9e575b
prepare for CRAN
2023-10-20 14:51:48 +02:00
eff164ecb1
indicate unique identifiers
2023-07-12 21:26:32 +02:00
70c601ca11
breakpoints UTI interpretation fix
2023-07-10 13:41:52 +02:00
acb534102b
new species groups, updated clinical breakpoints
2023-07-08 17:30:05 +02:00
Dr. Matthijs Berends
f065945d7b
Update clinical breakpoints and fix some as.mo() bugs ( #117 )
...
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102 , fixes #112 , fixes #113 , fixes #114 , fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
9591688811
documentation update
2023-05-27 10:39:22 +02:00
c6135d2082
updated microorganism codes
2023-05-26 16:10:01 +02:00
91fa73dedf
add oxygen tolerance
2023-05-11 21:56:27 +02:00
ed70f95380
Fix clinical breakpoints
2023-04-14 23:14:34 +02:00
147f9112e9
Fix some WHONET codes
2023-04-14 11:12:26 +02:00
c2cfc5ef84
fix for antibiogram(), transform WHONET data set to sir
2023-02-22 15:40:05 +01:00
bc434db835
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
1a0dc4bf46
revert back to pre-antibiogram
2023-02-09 13:07:39 +01:00
9e99e66f01
use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
19fd0ef121
sort sir history
2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR
2023-01-21 23:47:20 +01:00
f619fb683b
support new mo codes
2022-12-27 15:16:15 +01:00
b1b7534c78
incorporate Bartlett et al (2022)
2022-12-19 15:32:41 +01:00
5f3a7694aa
microorganisms update, added Salmonella groups
2022-12-16 16:10:43 +01:00
f6862a139d
expert rules 12.0
2022-11-14 15:20:39 +01:00
7ca44fb756
cleanup and new intro logo
2022-11-13 13:44:25 +01:00
