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Commit Graph

339 Commits

Author SHA1 Message Date
bf0402a653 (v1.1.0.9009) lose dependencies 2020-05-18 10:30:53 +02:00
071bdc5a9e (v1.1.0.9008) lose dependencies 2020-05-17 11:56:12 +02:00
29609a0e2c (v1.1.0.9006) lose dependencies 2020-05-16 20:42:45 +02:00
df2456b91f (v1.1.0.9005) lose dependencies 2020-05-16 20:08:21 +02:00
7f3da74b17 (v1.1.0.9004) lose dependencies 2020-05-16 13:05:47 +02:00
9fce546901 (v1.1.0.9003) CI fix 2020-05-01 09:14:32 +02:00
5bdece1f9d (v1.1.0.9000) CI fix 2020-04-30 09:05:03 +02:00
b040185269 (v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI 2020-04-29 14:33:44 +02:00
4be54d608c (v1.0.1.9008) RIVM abbreviations for drugs 2020-04-14 20:38:09 +02:00
219cff403f (v1.0.1.9004) Support dplyr 1.0.0 2020-03-14 14:05:43 +01:00
77656a676c (v1.0.1.9002) PCA unit tests 2020-03-08 11:18:59 +01:00
9fc858f208 (v1.0.1.9001) PCA unit tests 2020-03-08 09:12:11 +01:00
0595af2801 (v1.0.0.9006) fix WARNING 2020-02-21 21:26:58 +01:00
ea32e9916a (v1.0.0.9005) info printing only in interactive mode 2020-02-21 21:13:38 +01:00
47fe8b7820 (v1.0.0.9004) add example_isolaten_unclean 2020-02-21 16:05:19 +01:00
bb3728f023 (v1.0.0.9003) prepare for short update 2020-02-21 13:13:34 +01:00
c6184a0fb8 (v0.9.0.9029) add uti to as.rsi() 2020-02-20 13:19:23 +01:00
c7a93af3d0 (v0.9.0.9024) global vars fix 2020-02-14 20:03:43 +01:00
9b8b02960e (v0.9.0.9023) EUCAST 2020 guidelines 2020-02-14 19:54:13 +01:00
f152ab9a48 (v0.9.0.9018) Remove mo_history 2020-01-31 23:27:38 +01:00
a13c62e6e8 (v0.9.0.9016) Support SNOMED codes 2020-01-27 19:14:23 +01:00
449d9bde35 (v0.9.0.9012) Support for LOINC codes 2020-01-26 20:20:00 +01:00
ced1a7b7fa (v0.9.0.9008) Happy new year! Add lifecycles 2020-01-05 17:22:09 +01:00
ba3ce77f02 (v0.9.0.9005) as.mo for G. species 2019-12-21 10:56:06 +01:00
9feef53bde (v0.8.0.9037) complete documentation rewrite 2019-11-28 23:00:37 +01:00
c5f00f4a9f (v0.8.0.9036) complete documentation rewrite 2019-11-28 22:32:17 +01:00
267320f15f (v0.8.0.9033) antivirals data set, cleanup 2019-11-18 12:10:47 +01:00
59ededa8dc (v0.8.0.9027) adding susceptibility() and resistance() 2019-11-10 12:16:56 +01:00
a8c48cb2d7 (v0.8.0.9025) appveyor fix 2019-11-10 09:21:43 +01:00
07f945de53 (v0.8.0.9024) appveyor fix 2019-11-10 09:04:18 +01:00
1de1cc58f2 ci fix 2019-11-06 16:22:44 +01:00
1c4f91ab74 ci fix 2019-11-06 16:08:58 +01:00
e2d05cb1b0 (v0.8.0.9017) keywords update 2019-11-06 14:43:23 +01:00
5345d2759a (v0.8.0.9012) mdro improvement 2019-11-05 11:28:52 +01:00
29e448883d (v0.8.0.9008) new verbose mode for MDROs 2019-11-03 22:24:42 +01:00
09c4b04cd0 (v0.8.0.9007) Enterobacterales order 2019-10-30 23:02:50 +01:00
412077a6f2 (v0.8.0.9005) fix unit tests 2019-10-26 22:21:26 +02:00
d2e8249edd (v0.8.0.9004) added MDR guideline by Magiorakos et al. 2019-10-26 21:56:41 +02:00
3e5ab53209 (v0.8.0.9002) eucast_rules() fix for S. maltophilia 2019-10-23 14:48:25 +02:00
10e6b225e7 (v0.7.1.9107) v0.8.0 2019-10-15 14:35:23 +02:00
00cdb498a0 (v0.7.1.9102) lintr 2019-10-11 17:21:02 +02:00
5dbff3e170 (v0.7.1.9098) mdro() unit test fix 2019-10-07 15:12:42 +02:00
4e9c4c1b4e (v0.7.1.9096) German guideline for mdro() 2019-10-07 14:32:06 +02:00
b6653a620a (v0.7.1.9093) as.ab() fix 2019-10-06 21:07:38 +02:00
8bc4081b03 (v0.7.1.9092) as.ab() improvements 2019-10-04 15:36:12 +02:00
edb599ae0b (v0.7.1.9091) percentage from clean pkg 2019-09-30 16:45:36 +02:00
76dc948067 (v0.7.1.9084) CI fix 2019-09-23 20:55:54 +02:00
64d9829030 (v0.7.1.9081) bug_drug fixes 2019-09-23 13:53:50 +02:00
3596adb295 (v0.7.1.9076) mo codes 2019-09-20 12:33:05 +02:00
e2aa4f996b (v0.7.1.9075) new microorganism codes 2019-09-18 15:46:09 +02:00
398c5bdc4f (v0.7.1.9073) as.mo() self-learning algorithm 2019-09-15 22:57:30 +02:00
cd178ee569 (v0.7.1.9072) key_antibiotics() for foreign systems 2019-09-12 15:08:53 +02:00
b5d2a08401 (v0.7.1.9071) p_symbol() 2019-09-03 09:47:39 +02:00
06b6266366 (v0.7.1.9070) na.rm for age(), age_groups() 2019-09-02 15:17:41 +02:00
c7be72f0ce (v0.7.1.9069) documentation update 2019-09-01 13:16:57 +02:00
88ee1b7268 (v0.7.1.9068) gramstain to freq() 2019-08-30 14:50:56 +02:00
e2b78fa428 (v0.7.1.9066) bug-drug fix 2019-08-27 23:00:00 +02:00
93be16484b (v0.7.1.9063) septic_patients -> example_isolates 2019-08-27 16:45:42 +02:00
7a6fce4eb8 (v0.7.1.9062) mo/ab assignment improvements 2019-08-26 16:02:03 +02:00
e46cb0399f (v0.7.1.9059) bug_drug_combinations 2019-08-25 22:53:22 +02:00
04d49a62af (v0.7.1.9057) get_column_abx() improvement 2019-08-15 17:09:27 +02:00
7108454ba5 (v0.7.1.9055) algorithm improvements 2019-08-13 16:15:08 +02:00
6c4822164c Merge branch 'premaster' 2019-08-12 19:32:30 +02:00
5f2733349e (v0.7.1.9038) mo algorithm inprovements 2019-08-12 19:07:15 +02:00
bd252a2984 (v0.7.1.9036) preserve ab/mo classes in subsetting 2019-08-12 14:48:09 +02:00
990709c151 Merge branch 'premaster' 2019-08-11 22:23:18 +02:00
1d423cca89 (v0.7.1.9035) cephalosporins and unit tests 2019-08-11 19:07:26 +02:00
b790030c5f Merge branch 'premaster' 2019-08-09 09:33:26 +02:00
1ce4b72dd2 (v0.7.1.9031) include_unknown for first_isolate() 2019-08-08 22:39:42 +02:00
43e81bda75 (v0.7.1.9029) unit test
Merge branch 'premaster'

# Conflicts:
#	tests/testthat/test-resistance_predict.R
2019-08-07 19:22:46 +02:00
f67c739892 (v0.7.1.9029) unit test 2019-08-07 18:56:14 +02:00
e5cc09dbc0 Merge branch 'premaster' 2019-08-07 16:27:37 +02:00
90c874025a (v0.7.1.9027) tibble printing 2019-08-07 15:37:39 +02:00
3e9a263fc4 Merge branch 'master' of https://gitlab.com/msberends/AMR 2019-08-06 16:16:57 +02:00
3a1f960f89 (v0.7.1.9024) eucast_rules() fix, new MOs 2019-08-06 14:39:22 +02:00
f404db85d4 Merge branch 'premaster' of https://gitlab.com/msberends/AMR into premaster 2019-08-04 13:32:36 +02:00
d6ab3896a1 (v0.7.1.9021) CI fix for resistance_predict 2019-08-04 10:48:41 +02:00
b730920bb3 Merge branch 'premaster' of https://gitlab.com/msberends/AMR into premaster 2019-07-29 23:48:34 +02:00
240f03a672 (v0.7.1.9015) Remove freq() 2019-07-29 13:33:48 +02:00
7bd29cb8ef codecov update 2019-07-11 16:08:56 +02:00
68230d0712 (v0.7.1.90012) mo_shortname fix 2019-07-10 21:36:51 +02:00
a56a87c7db quickfix 2019-07-09 20:26:42 +02:00
c57ad26c5b (v0.7.1.9007) mdro update 2019-07-04 15:26:07 +02:00
4ff20af123 (v0.7.1.9006) new rsi calculations, atc class removal 2019-07-02 16:48:52 +02:00
156d550895 (v0.7.1.9005) new rsi calculations, atc class removal 2019-07-01 14:03:15 +02:00
65c6702b21 (v0.7.1.9004) atc class removal 2019-06-27 11:57:45 +02:00
b94638d53e (v0.7.0.9014) unit tests 2019-06-22 20:14:06 +02:00
c9156c004a (v0.7.0.9013) mo_synonym fix 2019-06-22 14:49:12 +02:00
9c39c35f86 (v0.7.0.9010) mo_synonyms, plot/barplot fixes 2019-06-16 21:42:40 +02:00
254745061c (v0.7.0.9008) T. vaginalis, rsi_df 2019-06-13 14:28:46 +02:00
8f674e19bb (v0.7.0.9005) ab algorithm update 2019-06-11 14:18:25 +02:00
ec48f1d83b (v0.7.0.9003) scale fix 2019-06-08 23:50:06 +02:00
f02679fb63 (v0.7.0.9001) new pathovars, small fixes 2019-06-07 22:47:37 +02:00
270aa0dd33 v0.7.0 2019-06-03 17:45:22 +02:00
bd73988f15 (v0.6.1.9053) prerelease fixes 2019-06-02 19:23:19 +02:00
5608b27c7c (v0.6.1.9051) support staged install 2019-06-01 20:54:56 +02:00
4bac768557 (v0.6.1.9048) data creation fox 2019-05-31 21:01:14 +02:00
0a6580b4eb (v0.6.1.9047) ggplot fix 2019-05-31 20:48:22 +02:00
4ed27c7e7a (v0.6.1.9046) ggplot fix 2019-05-31 20:25:57 +02:00
f03f71eced (v0.6.1.9045) age test fix 2019-05-31 14:40:15 +02:00