 dr. M.S. (Matthijs) Berends
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ea32e9916a
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(v1.0.0.9005) info printing only in interactive mode
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2020-02-21 21:13:38 +01:00 |
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dr. M.S. (Matthijs) Berends
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47fe8b7820
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(v1.0.0.9004) add example_isolaten_unclean
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2020-02-21 16:05:19 +01:00 |
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dr. M.S. (Matthijs) Berends
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bb3728f023
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(v1.0.0.9003) prepare for short update
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2020-02-21 13:13:34 +01:00 |
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dr. M.S. (Matthijs) Berends
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c6184a0fb8
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(v0.9.0.9029) add uti to as.rsi()
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2020-02-20 13:19:23 +01:00 |
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dr. M.S. (Matthijs) Berends
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c7a93af3d0
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(v0.9.0.9024) global vars fix
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2020-02-14 20:03:43 +01:00 |
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dr. M.S. (Matthijs) Berends
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9b8b02960e
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(v0.9.0.9023) EUCAST 2020 guidelines
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2020-02-14 19:54:13 +01:00 |
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dr. M.S. (Matthijs) Berends
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f152ab9a48
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(v0.9.0.9018) Remove mo_history
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2020-01-31 23:27:38 +01:00 |
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dr. M.S. (Matthijs) Berends
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a13c62e6e8
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(v0.9.0.9016) Support SNOMED codes
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2020-01-27 19:14:23 +01:00 |
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dr. M.S. (Matthijs) Berends
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449d9bde35
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(v0.9.0.9012) Support for LOINC codes
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2020-01-26 20:20:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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ced1a7b7fa
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(v0.9.0.9008) Happy new year! Add lifecycles
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2020-01-05 17:22:09 +01:00 |
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dr. M.S. (Matthijs) Berends
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ba3ce77f02
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(v0.9.0.9005) as.mo for G. species
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2019-12-21 10:56:06 +01:00 |
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dr. M.S. (Matthijs) Berends
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9feef53bde
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(v0.8.0.9037) complete documentation rewrite
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2019-11-28 23:00:37 +01:00 |
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dr. M.S. (Matthijs) Berends
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c5f00f4a9f
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(v0.8.0.9036) complete documentation rewrite
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2019-11-28 22:32:17 +01:00 |
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dr. M.S. (Matthijs) Berends
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267320f15f
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(v0.8.0.9033) antivirals data set, cleanup
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2019-11-18 12:10:47 +01:00 |
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dr. M.S. (Matthijs) Berends
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59ededa8dc
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(v0.8.0.9027) adding susceptibility() and resistance()
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2019-11-10 12:16:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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a8c48cb2d7
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(v0.8.0.9025) appveyor fix
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2019-11-10 09:21:43 +01:00 |
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dr. M.S. (Matthijs) Berends
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07f945de53
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(v0.8.0.9024) appveyor fix
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2019-11-10 09:04:18 +01:00 |
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dr. M.S. (Matthijs) Berends
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1de1cc58f2
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ci fix
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2019-11-06 16:22:44 +01:00 |
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dr. M.S. (Matthijs) Berends
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1c4f91ab74
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ci fix
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2019-11-06 16:08:58 +01:00 |
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dr. M.S. (Matthijs) Berends
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e2d05cb1b0
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(v0.8.0.9017) keywords update
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2019-11-06 14:43:23 +01:00 |
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dr. M.S. (Matthijs) Berends
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5345d2759a
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(v0.8.0.9012) mdro improvement
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2019-11-05 11:28:52 +01:00 |
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dr. M.S. (Matthijs) Berends
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29e448883d
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(v0.8.0.9008) new verbose mode for MDROs
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2019-11-03 22:24:42 +01:00 |
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dr. M.S. (Matthijs) Berends
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09c4b04cd0
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(v0.8.0.9007) Enterobacterales order
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2019-10-30 23:02:50 +01:00 |
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dr. M.S. (Matthijs) Berends
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412077a6f2
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(v0.8.0.9005) fix unit tests
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2019-10-26 22:21:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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d2e8249edd
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(v0.8.0.9004) added MDR guideline by Magiorakos et al.
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2019-10-26 21:56:41 +02:00 |
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dr. M.S. (Matthijs) Berends
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3e5ab53209
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(v0.8.0.9002) eucast_rules() fix for S. maltophilia
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2019-10-23 14:48:25 +02:00 |
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dr. M.S. (Matthijs) Berends
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10e6b225e7
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(v0.7.1.9107) v0.8.0
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2019-10-15 14:35:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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00cdb498a0
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(v0.7.1.9102) lintr
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2019-10-11 17:21:02 +02:00 |
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dr. M.S. (Matthijs) Berends
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5dbff3e170
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(v0.7.1.9098) mdro() unit test fix
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2019-10-07 15:12:42 +02:00 |
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dr. M.S. (Matthijs) Berends
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4e9c4c1b4e
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(v0.7.1.9096) German guideline for mdro()
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2019-10-07 14:32:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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b6653a620a
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(v0.7.1.9093) as.ab() fix
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2019-10-06 21:07:38 +02:00 |
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dr. M.S. (Matthijs) Berends
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8bc4081b03
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(v0.7.1.9092) as.ab() improvements
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2019-10-04 15:36:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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edb599ae0b
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(v0.7.1.9091) percentage from clean pkg
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2019-09-30 16:45:36 +02:00 |
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dr. M.S. (Matthijs) Berends
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76dc948067
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(v0.7.1.9084) CI fix
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2019-09-23 20:55:54 +02:00 |
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dr. M.S. (Matthijs) Berends
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64d9829030
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(v0.7.1.9081) bug_drug fixes
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2019-09-23 13:53:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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3596adb295
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(v0.7.1.9076) mo codes
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2019-09-20 12:33:05 +02:00 |
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dr. M.S. (Matthijs) Berends
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e2aa4f996b
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(v0.7.1.9075) new microorganism codes
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2019-09-18 15:46:09 +02:00 |
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dr. M.S. (Matthijs) Berends
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398c5bdc4f
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(v0.7.1.9073) as.mo() self-learning algorithm
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2019-09-15 22:57:30 +02:00 |
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dr. M.S. (Matthijs) Berends
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cd178ee569
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(v0.7.1.9072) key_antibiotics() for foreign systems
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2019-09-12 15:08:53 +02:00 |
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dr. M.S. (Matthijs) Berends
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b5d2a08401
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(v0.7.1.9071) p_symbol()
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2019-09-03 09:47:39 +02:00 |
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dr. M.S. (Matthijs) Berends
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06b6266366
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(v0.7.1.9070) na.rm for age(), age_groups()
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2019-09-02 15:17:41 +02:00 |
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dr. M.S. (Matthijs) Berends
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c7be72f0ce
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(v0.7.1.9069) documentation update
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2019-09-01 13:16:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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88ee1b7268
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(v0.7.1.9068) gramstain to freq()
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2019-08-30 14:50:56 +02:00 |
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dr. M.S. (Matthijs) Berends
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e2b78fa428
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(v0.7.1.9066) bug-drug fix
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2019-08-27 23:00:00 +02:00 |
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dr. M.S. (Matthijs) Berends
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93be16484b
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(v0.7.1.9063) septic_patients -> example_isolates
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2019-08-27 16:45:42 +02:00 |
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dr. M.S. (Matthijs) Berends
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7a6fce4eb8
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(v0.7.1.9062) mo/ab assignment improvements
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2019-08-26 16:02:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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e46cb0399f
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(v0.7.1.9059) bug_drug_combinations
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2019-08-25 22:53:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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04d49a62af
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(v0.7.1.9057) get_column_abx() improvement
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2019-08-15 17:09:27 +02:00 |
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dr. M.S. (Matthijs) Berends
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7108454ba5
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(v0.7.1.9055) algorithm improvements
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2019-08-13 16:15:08 +02:00 |
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dr. M.S. (Matthijs) Berends
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6c4822164c
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Merge branch 'premaster'
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2019-08-12 19:32:30 +02:00 |
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dr. M.S. (Matthijs) Berends
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5f2733349e
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(v0.7.1.9038) mo algorithm inprovements
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2019-08-12 19:07:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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bd252a2984
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(v0.7.1.9036) preserve ab/mo classes in subsetting
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2019-08-12 14:48:09 +02:00 |
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dr. M.S. (Matthijs) Berends
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990709c151
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Merge branch 'premaster'
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2019-08-11 22:23:18 +02:00 |
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dr. M.S. (Matthijs) Berends
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1d423cca89
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(v0.7.1.9035) cephalosporins and unit tests
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2019-08-11 19:07:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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b790030c5f
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Merge branch 'premaster'
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2019-08-09 09:33:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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1ce4b72dd2
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(v0.7.1.9031) include_unknown for first_isolate()
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2019-08-08 22:39:42 +02:00 |
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dr. M.S. (Matthijs) Berends
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43e81bda75
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(v0.7.1.9029) unit test
Merge branch 'premaster'
# Conflicts:
# tests/testthat/test-resistance_predict.R
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2019-08-07 19:22:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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f67c739892
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(v0.7.1.9029) unit test
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2019-08-07 18:56:14 +02:00 |
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dr. M.S. (Matthijs) Berends
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e5cc09dbc0
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Merge branch 'premaster'
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2019-08-07 16:27:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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90c874025a
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(v0.7.1.9027) tibble printing
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2019-08-07 15:37:39 +02:00 |
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dr. M.S. (Matthijs) Berends
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3e9a263fc4
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Merge branch 'master' of https://gitlab.com/msberends/AMR
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2019-08-06 16:16:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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3a1f960f89
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(v0.7.1.9024) eucast_rules() fix, new MOs
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2019-08-06 14:39:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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f404db85d4
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Merge branch 'premaster' of https://gitlab.com/msberends/AMR into premaster
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2019-08-04 13:32:36 +02:00 |
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dr. M.S. (Matthijs) Berends
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d6ab3896a1
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(v0.7.1.9021) CI fix for resistance_predict
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2019-08-04 10:48:41 +02:00 |
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dr. M.S. (Matthijs) Berends
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b730920bb3
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Merge branch 'premaster' of https://gitlab.com/msberends/AMR into premaster
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2019-07-29 23:48:34 +02:00 |
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dr. M.S. (Matthijs) Berends
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240f03a672
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(v0.7.1.9015) Remove freq()
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2019-07-29 13:33:48 +02:00 |
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dr. M.S. (Matthijs) Berends
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7bd29cb8ef
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codecov update
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2019-07-11 16:08:56 +02:00 |
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dr. M.S. (Matthijs) Berends
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68230d0712
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(v0.7.1.90012) mo_shortname fix
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2019-07-10 21:36:51 +02:00 |
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dr. M.S. (Matthijs) Berends
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a56a87c7db
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quickfix
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2019-07-09 20:26:42 +02:00 |
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dr. M.S. (Matthijs) Berends
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c57ad26c5b
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(v0.7.1.9007) mdro update
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2019-07-04 15:26:07 +02:00 |
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dr. M.S. (Matthijs) Berends
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4ff20af123
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(v0.7.1.9006) new rsi calculations, atc class removal
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2019-07-02 16:48:52 +02:00 |
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dr. M.S. (Matthijs) Berends
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156d550895
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(v0.7.1.9005) new rsi calculations, atc class removal
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2019-07-01 14:03:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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65c6702b21
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(v0.7.1.9004) atc class removal
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2019-06-27 11:57:45 +02:00 |
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dr. M.S. (Matthijs) Berends
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b94638d53e
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(v0.7.0.9014) unit tests
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2019-06-22 20:14:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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c9156c004a
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(v0.7.0.9013) mo_synonym fix
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2019-06-22 14:49:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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9c39c35f86
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(v0.7.0.9010) mo_synonyms, plot/barplot fixes
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2019-06-16 21:42:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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254745061c
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(v0.7.0.9008) T. vaginalis, rsi_df
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2019-06-13 14:28:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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8f674e19bb
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(v0.7.0.9005) ab algorithm update
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2019-06-11 14:18:25 +02:00 |
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dr. M.S. (Matthijs) Berends
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ec48f1d83b
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(v0.7.0.9003) scale fix
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2019-06-08 23:50:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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f02679fb63
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(v0.7.0.9001) new pathovars, small fixes
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2019-06-07 22:47:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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270aa0dd33
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v0.7.0
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2019-06-03 17:45:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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bd73988f15
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(v0.6.1.9053) prerelease fixes
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2019-06-02 19:23:19 +02:00 |
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dr. M.S. (Matthijs) Berends
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5608b27c7c
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(v0.6.1.9051) support staged install
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2019-06-01 20:54:56 +02:00 |
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dr. M.S. (Matthijs) Berends
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4bac768557
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(v0.6.1.9048) data creation fox
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2019-05-31 21:01:14 +02:00 |
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dr. M.S. (Matthijs) Berends
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0a6580b4eb
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(v0.6.1.9047) ggplot fix
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2019-05-31 20:48:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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4ed27c7e7a
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(v0.6.1.9046) ggplot fix
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2019-05-31 20:25:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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f03f71eced
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(v0.6.1.9045) age test fix
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2019-05-31 14:40:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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493ae2ba0c
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(v0.6.1.9044) first_isolate fix for species
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2019-05-31 14:25:11 +02:00 |
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dr. M.S. (Matthijs) Berends
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8b5e2b030b
|
added boxplot for (grouped) freq()
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2019-05-29 19:56:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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27380fa021
|
fixes for microorganisms.codes
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2019-05-28 16:50:40 +02:00 |
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dr. M.S. (Matthijs) Berends
|
60983a1640
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added mdr_tb()
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2019-05-23 16:58:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
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07d26cd485
|
faster determination of abx
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2019-05-20 19:12:41 +02:00 |
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dr. M.S. (Matthijs) Berends
|
4ca00e1868
|
speed improvement eucast_rules(), support more old MO codes
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2019-05-20 12:00:18 +02:00 |
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dr. M.S. (Matthijs) Berends
|
4c3cf85a65
|
ab_info, other bug fixes
|
2019-05-16 21:20:00 +02:00 |
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dr. M.S. (Matthijs) Berends
|
f6bf54b37d
|
documentation fix
|
2019-05-13 20:16:51 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
cc403169c6
|
first isolate missing dates fix
|
2019-05-13 14:56:23 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c4aa92b4a7
|
fixed unit test
|
2019-05-13 13:03:30 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
0dc0715dc6
|
CI tests
|
2019-05-13 12:21:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
38a4421450
|
CI tests
|
2019-05-13 10:10:16 +02:00 |
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dr. M.S. (Matthijs) Berends
|
68cc7ef0d0
|
new antibiotics
|
2019-05-10 16:44:59 +02:00 |