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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 22:06:12 +01:00
Commit Graph

81 Commits

Author SHA1 Message Date
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
dad25302f2 make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
19fd0ef121 sort sir history 2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
a0ee86536a unit tests 2023-01-05 14:43:18 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
f6862a139d expert rules 12.0 2022-11-14 15:20:39 +01:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
b84d647cac (v1.8.1.9012) update prevalence of some genera 2022-06-03 13:28:55 +02:00
3b2b2be5f8 (v1.8.0.9002) as.rsi() cleanup, more informative warnings 2022-03-02 15:38:55 +01:00
25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
0ec81cc12e (v1.7.1.9021) autoplot generics 2021-07-12 22:12:28 +02:00
6838f03bde (v1.7.1.9020) autoplot generics 2021-07-12 20:24:49 +02:00
99be4c7e7e (v1.7.1.9002) ab class selectors update 2021-06-14 22:04:04 +02:00
a33c8a51a2 v1.7.0 2021-05-26 10:59:54 +02:00
a13fd98e8b (v1.6.0.9063) prepare new release 2021-05-24 09:00:11 +02:00
aeea00881e (v1.6.0.9023) new unit test flow 2021-05-13 19:31:47 +02:00
29dbfa2f49 (v1.6.0.9021) join functions update 2021-05-12 18:15:03 +02:00
850c123de7 (v1.5.0.9032) All group generics for MICs 2021-03-07 13:52:39 +01:00
2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00
286eaa9699 (v1.5.0.9010) MDRO vignette update, get_episode for < day 2021-01-24 14:48:56 +01:00
4eab095306 (v1.5.0.9006) major documentation update 2021-01-18 16:57:56 +01:00
526f8afb08 (v1.4.0.9052) replaced all sapply's with type-safe vapply's 2020-12-28 22:24:33 +01:00
8b52f9b1be (v1.4.0.9047) unit tests 2020-12-27 00:30:28 +01:00
128ebcfd62 (v1.4.0.9043) documentation update 2020-12-22 00:51:17 +01:00
81af41da3a (v1.4.0.9041) updates based on review 2020-12-17 16:22:25 +01:00
01d9522434 (v1.4.0.9017) stringsAsFactors definitions 2020-11-11 16:49:27 +01:00
15c732703d (v1.4.0.9015) bugfix 2020-11-10 16:35:56 +01:00
4e9ccb4435 (v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening 2020-10-19 17:09:19 +02:00
28e77680c5 (v1.4.0) matching score update 2020-10-08 11:16:03 +02:00
4e0374af29 (v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup 2020-09-29 23:35:46 +02:00
9667c2994f (v1.3.0.9029) eucast rules fix, unique() 2020-09-25 14:44:50 +02:00
4e40e42011 (v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix 2020-09-18 16:05:53 +02:00
c5f7294381 (v1.3.0) skip more CRAN tests 2020-07-31 10:50:08 +02:00
6ab468362d (v1.2.0.9034) code cleaning 2020-07-13 09:17:24 +02:00
76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
93a158aebd (v1.2.0.9011) mo_domain(), improved error handling 2020-06-22 11:18:40 +02:00
e88d7853f5 (v1.2.0.9010) documentation fix 2020-06-17 21:35:10 +02:00
ac12392da3 (v1.2.0.9008) ab_class improvement 2020-06-17 15:14:37 +02:00
b44e2c9202 v1.2.0 2020-05-28 16:48:55 +02:00
d9a4b0bcaf (v1.1.0.9021) 1st isolates update 2020-05-28 10:51:56 +02:00
f68d71a5e0 (v1.1.0.9007) lose dependencies 2020-05-16 21:40:50 +02:00
df2456b91f (v1.1.0.9005) lose dependencies 2020-05-16 20:08:21 +02:00