Commit Graph

283 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends eef00069fd add all options to documentation 2023-01-23 20:07:57 +01:00
dr. M.S. (Matthijs) Berends 19fd0ef121 sort sir history 2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends 98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
dr. M.S. (Matthijs) Berends b94bc6c67b adding mo fixes 2023-01-14 19:50:25 +01:00
dr. M.S. (Matthijs) Berends ca79068604 Fix for adding MO's 2023-01-14 17:10:10 +01:00
dr. M.S. (Matthijs) Berends 1029aa2fdc algorithm improvement 2023-01-07 14:53:14 +01:00
dr. M.S. (Matthijs) Berends 2375bfdcb5 documentation 2023-01-07 01:51:19 +01:00
dr. M.S. (Matthijs) Berends 61c0bdb7af documentation 2022-12-28 15:04:59 +01:00
dr. M.S. (Matthijs) Berends ba3b237bdf custom mo update 2022-12-28 14:20:10 +01:00
dr. M.S. (Matthijs) Berends f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
dr. M.S. (Matthijs) Berends 6f4bb603ec unit tests 2022-12-20 22:18:50 +01:00
dr. M.S. (Matthijs) Berends b1b7534c78 incorporate Bartlett et al (2022) 2022-12-19 15:32:41 +01:00
dr. M.S. (Matthijs) Berends 23fe427cbc Fixes for Salmonella 2022-12-17 14:31:33 +01:00
dr. M.S. (Matthijs) Berends 5f3a7694aa microorganisms update, added Salmonella groups 2022-12-16 16:10:43 +01:00
dr. M.S. (Matthijs) Berends 31fb81c382 revised `as.rsi()`, fix for `mdro()` 2022-11-24 20:29:00 +01:00
dr. M.S. (Matthijs) Berends 05d536ebb7 complexes 2022-11-17 15:23:29 +01:00
dr. M.S. (Matthijs) Berends d40e0ef20b completely updated `antibiotics` 2022-10-30 14:31:45 +01:00
dr. M.S. (Matthijs) Berends c2801ba7a1 new rsi_translation 2022-10-22 22:00:15 +02:00
dr. M.S. (Matthijs) Berends 85e2fbe4a3 remove warnings from unit tests 2022-10-19 11:47:57 +02:00
dr. M.S. (Matthijs) Berends f203928f7e coercion fixes 2022-10-19 06:59:36 +02:00
dr. M.S. (Matthijs) Berends 76bcd3528c move object assignment to AMR_env 2022-10-14 13:02:50 +02:00
dr. M.S. (Matthijs) Berends 43c638d122 add `mo_current()` 2022-10-10 10:12:08 +02:00
dr. M.S. (Matthijs) Berends b9342d103e fix documentation 2022-10-06 11:33:30 +02:00
Dr. Matthijs Berends cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
dr. M.S. (Matthijs) Berends 71db246d5c unit test fix 2022-08-28 19:17:12 +02:00
dr. M.S. (Matthijs) Berends 4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
dr. M.S. (Matthijs) Berends 303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
dr. M.S. (Matthijs) Berends 952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
dr. M.S. (Matthijs) Berends 3f2f60ab77 language updates 2022-08-19 12:33:14 +02:00
dr. M.S. (Matthijs) Berends 7f981e7778 (v1.8.1.9013) add Toxoplasma 2022-06-10 13:15:23 +02:00
dr. M.S. (Matthijs) Berends 7b0f1596bd (v1.8.0.9010) as.mo improvement 2022-03-15 17:35:02 +01:00
dr. M.S. (Matthijs) Berends 3b2b2be5f8 (v1.8.0.9002) as.rsi() cleanup, more informative warnings 2022-03-02 15:38:55 +01:00
dr. M.S. (Matthijs) Berends 18e8525d10 (v1.8.0.9001) as.mo improvement, fixes #52 2022-02-26 21:58:23 +01:00
dr. M.S. (Matthijs) Berends 25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
dr. M.S. (Matthijs) Berends d9274bcd0a (v1.7.1.9075) assignment operator 2021-12-14 22:59:27 +01:00
dr. M.S. (Matthijs) Berends 76dee66852 (v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests 2021-12-14 22:39:23 +01:00
dr. M.S. (Matthijs) Berends bd4bb1d72f (v1.7.1.9073) as.rsi() fix for UTIs 2021-12-14 21:47:14 +01:00
dr. M.S. (Matthijs) Berends 578e7dfee9 (v1.7.1.9070) Better WHONET support 2021-12-13 10:18:28 +01:00
dr. M.S. (Matthijs) Berends f90e27c1b0 (v1.7.1.9069) CLSI 2021 support 2021-12-12 11:36:58 +01:00
dr. M.S. (Matthijs) Berends 56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
dr. M.S. (Matthijs) Berends 77ba4318ea (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00
dr. M.S. (Matthijs) Berends 37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00
dr. M.S. (Matthijs) Berends 8f5e5a3fc2 (v1.7.1.9050) fix for as.mo 2021-10-05 14:00:35 +02:00
dr. M.S. (Matthijs) Berends 2bcf28281d (v1.7.1.9049) unit tests 2021-10-05 09:58:08 +02:00
dr. M.S. (Matthijs) Berends a2d249962f (v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47 2021-08-16 21:54:34 +02:00
dr. M.S. (Matthijs) Berends b228eb1536 (v1.7.1.9016) only_treatable ab selectors 2021-07-08 22:23:28 +02:00
dr. M.S. (Matthijs) Berends 625a6fb304 (v1.7.1.9015) removed S3 taxonomic_name again 2021-07-07 20:34:05 +02:00
dr. M.S. (Matthijs) Berends d04e83f494 (v1.7.1.9005) ab class selectors for R-3.0 and R-3.1 2021-06-22 12:16:42 +02:00
dr. M.S. (Matthijs) Berends c44d9392ca (v1.7.1.9004) more extensive unit tests 2021-06-15 10:51:04 +02:00
dr. M.S. (Matthijs) Berends 99be4c7e7e (v1.7.1.9002) ab class selectors update 2021-06-14 22:04:04 +02:00