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Commit Graph

768 Commits

Author SHA1 Message Date
89401ede9f (v1.3.0.9021) typo 2020-09-14 20:41:19 +02:00
ab60f613aa (v1.3.0.9020) fix for uncertainty in as.mo() 2020-09-14 19:41:48 +02:00
354c606d6a (v1.3.0.9019) small fix 2020-09-14 14:08:07 +02:00
7b6dd676f7 (v1.3.0.9018) language corrections 2020-09-14 12:21:23 +02:00
0f6760d427 (v1.3.0.9017) small fix 2020-09-12 13:54:21 +02:00
3ff871afeb (v1.3.0.9016) mo_uncertainties() overhaul 2020-09-12 08:49:01 +02:00
68e9cb78e9 (v1.3.0.9015) as.mo() speedup for valid taxonomic names 2020-09-03 20:59:21 +02:00
c4b87fe241 (v1.3.0.9014) as.mo() speed improvement 2020-09-03 12:31:48 +02:00
18e52f2725 (v1.3.0.9013) data sets vignette update 2020-08-29 21:52:51 +02:00
4f72b3bfc4 (v1.3.0.9012) data sets vignette update 2020-08-29 21:41:46 +02:00
50b953b141 (v1.3.0.9011) suggests pkg update 2020-08-29 12:04:23 +02:00
74a172ef55 (v1.3.0.9010) S3 extensions without dependencies 2020-08-28 21:55:47 +02:00
81af0b001c (v1.3.0.9009) documentation update 2020-08-26 16:13:40 +02:00
9b8db57c65 (v1.3.0.9008) also tibble printing for ab 2020-08-26 15:34:12 +02:00
5e45fdcf2a (v1.3.0.9007) tibble printing 2020-08-26 11:33:54 +02:00
c8c8bb4e3a (v1.3.0.9006) website update 2020-08-21 11:40:13 +02:00
818d0441e0 (v1.3.0.9005) website update 2020-08-17 21:49:58 +02:00
dab017a50f (v1.3.0.9004) data sets, as.disk() improvement 2020-08-16 21:38:42 +02:00
e73f0e211c (v1.3.0.9003) as.rsi() speed improvement 2020-08-15 12:54:47 +02:00
08d62bb5d5 (v1.3.0.9002) intrinsic_resistant data set 2020-08-14 13:36:10 +02:00
7d16bec21f (v1.3.0.9001) website update 2020-08-10 12:46:03 +02:00
0d9602a6a9 (v1.3.0.9000) support across() in as.rsi() 2020-08-10 11:44:58 +02:00
c5f7294381 (v1.3.0) skip more CRAN tests 2020-07-31 10:50:08 +02:00
8ff46eefe9 (v1.3.0) small MIC fix 2020-07-30 12:37:01 +02:00
ea4e5e5b81 (v1.3.0) v1.3.0 2020-07-29 13:48:50 +02:00
de0f7b8950 (v1.2.0.9040) conserve_capped_values for as.rsi() 2020-07-29 12:47:58 +02:00
e7def0aa4c (v1.2.0.9039) conserve_capped_values for as.rsi() 2020-07-29 11:46:59 +02:00
453f7f210b (v1.2.0.9038) CLSI 2019 fix 2020-07-29 10:33:47 +02:00
1b65d76cfb (v1.2.0.9037) survey on website 2020-07-28 18:39:57 +02:00
ab2b359e6b (v1.2.0.9036) unit test fix 2020-07-22 12:29:51 +02:00
09fba38ea6 (v1.2.0.9035) as.mo() speed improvement 2020-07-22 10:24:23 +02:00
6ab468362d (v1.2.0.9034) code cleaning 2020-07-13 09:17:24 +02:00
c0cf7ab02b (v1.2.0.9033) speed improvement mdro(), filter_ab_class() 2020-07-12 11:43:31 +02:00
1d66b5c43c (v1.2.0.9032) Permanently move to GitHub 2020-07-09 20:07:39 +02:00
a438dcc884 (v1.2.0.9031) GitHub Actions 2020-07-09 16:11:56 +02:00
7baa9d3658 (v1.2.0.9030) GitHub Actions 2020-07-09 14:12:11 +02:00
cf3c3ee8f7 (v1.2.0.9029) GitHub actions 2020-07-08 22:55:17 +02:00
d39d32448b (v1.2.0.9028) GitHub actions 2020-07-08 20:43:25 +02:00
5195e0b9da (v1.2.0.9027) move to github 2020-07-08 17:48:57 +02:00
76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
2134fc76e2 (v1.2.0.9025) AMR calculation speed improvement 2020-07-03 12:14:41 +02:00
46cf423eab (v1.2.0.9024) AMR calculation speed improvement 2020-07-03 10:51:55 +02:00
152ac5bcad (v1.2.0.9023) ab_from_text() improvement 2020-07-02 21:12:52 +02:00
298e67a45b (v1.2.0.9022) as.ab() improvement 2020-07-01 16:21:36 +02:00
afc660dc33 (v1.2.0.9021) only progressbar in interactive sessions 2020-07-01 11:51:26 +02:00
cc6ce0a938 (v1.2.0.9020) ab_from_text() improvement 2020-07-01 11:23:05 +02:00
329a0eb0b6 (v1.2.0.9019) ab_from_text() dose and administration 2020-07-01 11:07:01 +02:00
240d817b4e (v1.2.0.9018) ab_from_text() improvement 2020-06-26 13:15:46 +02:00
4f6f056077 (v1.2.0.9017) ab_from_text() improvement 2020-06-26 12:31:27 +02:00
b31003c0b6 (v1.2.0.9016) fix in rsi_calc() 2020-06-26 10:21:22 +02:00
033ca49817 (v1.2.0.9015) ab_from_text() 2020-06-25 19:20:50 +02:00
344bbd57f4 (v1.2.0.9014) ab_from_text() 2020-06-25 17:34:50 +02:00
8a66e475d7 (v1.2.0.9013) unit test fix 2020-06-22 13:18:40 +02:00
779a4e8348 (v1.2.0.9012) mo_domain(), improved error handling 2020-06-22 12:18:53 +02:00
93a158aebd (v1.2.0.9011) mo_domain(), improved error handling 2020-06-22 11:18:40 +02:00
e88d7853f5 (v1.2.0.9010) documentation fix 2020-06-17 21:35:10 +02:00
f18389d5d6 (v1.2.0.9009) pkg dependency fix 2020-06-17 16:29:10 +02:00
ac12392da3 (v1.2.0.9008) ab_class improvement 2020-06-17 15:14:37 +02:00
c4d7412f36 (v1.2.0.9007) Tidyverse selections 2020-06-17 01:39:30 +02:00
4f94e1312f (v1.2.0.9006) improve auto col-determination 2020-06-11 20:03:13 +02:00
352508889c (v1.2.0.9005) data set fix 2020-06-09 16:31:44 +02:00
8b692ecfcf (v1.2.0.9004) rsi_df() fix for groups 2020-06-09 16:18:03 +02:00
40221e5244 (v1.2.0.9003) better terminal colour support 2020-06-05 13:56:05 +02:00
2c8d600914 (v1.2.0.9002) fix for joins 2020-06-03 14:33:55 +02:00
5dc4c96b7d (v1.2.0.9001) filter_ab_class() update 2020-06-03 11:48:00 +02:00
02d07b9fb3 (v1.2.0.9000) eucast_rules() fix for tibbles 2020-06-02 16:05:56 +02:00
b44e2c9202 v1.2.0 2020-05-28 16:48:55 +02:00
d9a4b0bcaf (v1.1.0.9021) 1st isolates update 2020-05-28 10:51:56 +02:00
86d44054f0 (v1.1.0.9020) updated taxonomy 2020-05-27 16:37:49 +02:00
ae1969b941 (v1.1.0.9019) mo_source fix 2020-05-25 01:01:14 +02:00
f5ff2e6634 (v1.1.0.9018) as.ab() update, added ab_url() 2020-05-22 20:29:55 +02:00
e467cc103e (v1.1.0.9017) as.ab() update, added ab_url() 2020-05-22 20:15:19 +02:00
1b1e243d14 (v1.1.0.9016) small fix 2020-05-21 12:28:57 +02:00
743f9a5364 (v1.1.0.9015) new default eucast_rules 2020-05-20 12:00:17 +02:00
5216d2b520 (v1.1.0.9014) lose dependencies 2020-05-19 14:16:45 +02:00
cb1814f5ff (v1.1.0.9013) lose dependencies 2020-05-19 13:18:01 +02:00
19703eb5d3 (v1.1.0.9012) lose dependencies 2020-05-19 12:08:49 +02:00
218fd08097 (v1.1.0.9011) lose dependencies 2020-05-18 13:59:34 +02:00
d659c9baef (v1.1.0.9010) lose dependencies 2020-05-18 11:09:02 +02:00
bf0402a653 (v1.1.0.9009) lose dependencies 2020-05-18 10:30:53 +02:00
071bdc5a9e (v1.1.0.9008) lose dependencies 2020-05-17 11:56:12 +02:00
f68d71a5e0 (v1.1.0.9007) lose dependencies 2020-05-16 21:40:50 +02:00
29609a0e2c (v1.1.0.9006) lose dependencies 2020-05-16 20:42:45 +02:00
df2456b91f (v1.1.0.9005) lose dependencies 2020-05-16 20:08:21 +02:00
7f3da74b17 (v1.1.0.9004) lose dependencies 2020-05-16 13:05:47 +02:00
9fce546901 (v1.1.0.9003) CI fix 2020-05-01 09:14:32 +02:00
77d8f97e0c (v1.1.0.9002) CI fix 2020-04-30 18:46:29 +02:00
5bdece1f9d (v1.1.0.9000) CI fix 2020-04-30 09:05:03 +02:00
b040185269 (v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI 2020-04-29 14:33:44 +02:00
e0f4c93e82 v1.1.0 2020-04-17 19:16:30 +02:00
c2ffbd9f95 (v1.0.1.9009) prepare for next release 2020-04-15 11:30:28 +02:00
4be54d608c (v1.0.1.9008) RIVM abbreviations for drugs 2020-04-14 20:38:09 +02:00
cde65141d9 (v1.0.1.9007) small bugfix 2020-04-14 15:10:09 +02:00
7a6f819232 (v1.0.1.9006) added generic CLSI rules 2020-04-14 14:12:31 +02:00
d1cb7d3b6f (v1.0.1.9005) as.mo() improvements 2020-04-13 21:09:56 +02:00
219cff403f (v1.0.1.9004) Support dplyr 1.0.0 2020-03-14 14:05:43 +01:00
3760bcb11e (v1.0.1.9003) prevent devel from failing 2020-03-08 15:31:57 +01:00
77656a676c (v1.0.1.9002) PCA unit tests 2020-03-08 11:18:59 +01:00
9fc858f208 (v1.0.1.9001) PCA unit tests 2020-03-08 09:12:11 +01:00
fa0d9c58d9 (v1.0.1.9000) first PCA implementation 2020-03-07 21:48:21 +01:00
f444c24ed3 (v1.0.1) v 1.0.1 2020-02-23 20:56:11 +01:00
0d5e78b2cf (v1.0.0.9007) small doc fix 2020-02-22 17:03:47 +01:00
0595af2801 (v1.0.0.9006) fix WARNING 2020-02-21 21:26:58 +01:00
ea32e9916a (v1.0.0.9005) info printing only in interactive mode 2020-02-21 21:13:38 +01:00
47fe8b7820 (v1.0.0.9004) add example_isolaten_unclean 2020-02-21 16:05:19 +01:00
bb3728f023 (v1.0.0.9003) prepare for short update 2020-02-21 13:13:34 +01:00
6408911922 (v1.0.0.9002) fix lintr 2020-02-20 20:31:42 +01:00
bdb26f624f (v1.0.0.9001) add uti to as.rsi() 2020-02-20 17:21:01 +01:00
c6184a0fb8 (v0.9.0.9029) add uti to as.rsi() 2020-02-20 13:19:23 +01:00
a5db82c2fb v 1.0.0 2020-02-20 12:49:55 +01:00
c8981a563e (v0.9.0.9027) documentation fix 2020-02-17 15:07:25 +01:00
5e2b294351 (v0.9.0.9026) update documentation 2020-02-17 14:38:01 +01:00
11f00f8a0a (v0.9.0.9025) update as.rsi documentation 2020-02-16 22:43:56 +01:00
c7a93af3d0 (v0.9.0.9024) global vars fix 2020-02-14 20:03:43 +01:00
9b8b02960e (v0.9.0.9023) EUCAST 2020 guidelines 2020-02-14 19:54:13 +01:00
5a98e6b777 (v0.9.0.9022) inheritance fix 2020-02-10 14:18:15 +01:00
b4356a299c (v0.9.0.9021) inheritance fix 2020-02-10 12:25:02 +01:00
c7a76ba713 (v0.9.0.9020) as.mo() improvement 2020-02-09 22:04:29 +01:00
4e1c16c5a5 (v0.9.0.9019) website update 2020-02-01 15:09:36 +01:00
f152ab9a48 (v0.9.0.9018) Remove mo_history 2020-01-31 23:27:38 +01:00
1b80773c22 (v0.9.0.9017) documentation fix 2020-01-27 19:30:26 +01:00
a13c62e6e8 (v0.9.0.9016) Support SNOMED codes 2020-01-27 19:14:23 +01:00
42b079cdb7 (v0.9.0.9015) Fix for as.rsi.disk() 2020-01-27 11:37:00 +01:00
9a3891efe4 (v0.9.0.9014) Machine reading guidelines 2020-01-27 11:05:39 +01:00
423d1d3c41 (v0.9.0.9013) Support for LOINC codes 2020-01-26 20:38:54 +01:00
449d9bde35 (v0.9.0.9012) Support for LOINC codes 2020-01-26 20:20:00 +01:00
19172b1d48 (v0.9.0.9011) Support R 4.0 2020-01-15 16:40:34 +01:00
895e97c310 (v0.9.0.9010) Support R 4.0 2020-01-15 15:24:08 +01:00
64f5ceef03 (v0.9.0.9009) antibiotics data set update 2020-01-08 11:30:33 +01:00
ced1a7b7fa (v0.9.0.9008) Happy new year! Add lifecycles 2020-01-05 17:22:09 +01:00
f4669889e5 (v0.9.0.9007) website update 2019-12-27 11:56:54 +01:00
db5dfff0ca (v0.9.0.9006) added CITATION file 2019-12-22 11:43:38 +01:00
ba3ce77f02 (v0.9.0.9005) as.mo for G. species 2019-12-21 10:56:06 +01:00
cc8cd043e1 (v0.9.0.9004) website fix 2019-12-20 21:06:39 +01:00
2db2a2458a (v0.9.0.9003) as.mo() speedup for fullnames 2019-12-20 15:05:58 +01:00
f7eb6e4107 (v0.9.0.9002) website updates 2019-12-16 11:08:25 +01:00
56ce9bf665 (v0.9.0) website fixes 2019-11-30 12:01:50 +01:00
bb2ed55842 (v0.9.0) v0.9.0 2019-11-29 19:43:23 +01:00
9feef53bde (v0.8.0.9037) complete documentation rewrite 2019-11-28 23:00:37 +01:00
c5f00f4a9f (v0.8.0.9036) complete documentation rewrite 2019-11-28 22:32:17 +01:00
7c28b392b1 (v0.8.0.9035) add more mo codes 2019-11-24 22:48:56 +01:00
e53cc4990c (v0.8.0.9034) add cid to antivirals 2019-11-23 12:39:57 +01:00
267320f15f (v0.8.0.9033) antivirals data set, cleanup 2019-11-18 12:10:47 +01:00
67f3f4387b (v0.8.0.9032) fix regex error 2019-11-15 16:50:46 +01:00
09e2730b53 (v0.8.0.9031) as.mo() improvements 2019-11-15 15:25:03 +01:00
248b45da71 (v0.8.0.9030) depend on tidyr >= 1.0.0 2019-11-11 10:46:39 +01:00
d22834c5b8 (v0.8.0.9029) cleanup 2019-11-10 15:50:18 +01:00
54b6322056 (v0.8.0.9028) examples fix 2019-11-10 13:17:20 +01:00
59ededa8dc (v0.8.0.9027) adding susceptibility() and resistance() 2019-11-10 12:16:56 +01:00
228a4245cb (v0.8.0.9026) appveyor fix 2019-11-10 09:26:25 +01:00
a8c48cb2d7 (v0.8.0.9025) appveyor fix 2019-11-10 09:21:43 +01:00
07f945de53 (v0.8.0.9024) appveyor fix 2019-11-10 09:04:18 +01:00
e252f68cdb (v0.8.0.9023) appveyor fix 2019-11-09 17:13:31 +01:00
32e3a98967 (v0.8.0.9022) update vignettes 2019-11-09 16:37:41 +01:00
ef640add2d (v0.8.0.9021) update vignettes 2019-11-09 11:33:22 +01:00
e2d05cb1b0 (v0.8.0.9017) keywords update 2019-11-06 14:43:23 +01:00
be9a3e6b12 (v0.8.0.9016) unit test update 2019-11-05 23:07:05 +01:00
d19c44a25f (v0.8.0.9015) unit test update 2019-11-05 22:42:00 +01:00
a1fd2cd98a (v0.8.0.9014) unit test update 2019-11-05 22:23:45 +01:00
2560aa1a53 (v0.8.0.9013) unit test update 2019-11-05 21:52:58 +01:00
5345d2759a (v0.8.0.9012) mdro improvement 2019-11-05 11:28:52 +01:00
fe606e287b (v0.8.0.9011) col guess update 2019-11-04 12:08:08 +01:00
9060233953 (v0.8.0.9010) mdro bug fix 2019-11-04 11:35:34 +01:00
0bb531f3e0 (v0.8.0.9009) unit test 2019-11-03 22:41:29 +01:00
29e448883d (v0.8.0.9008) new verbose mode for MDROs 2019-11-03 22:24:42 +01:00
09c4b04cd0 (v0.8.0.9007) Enterobacterales order 2019-10-30 23:02:50 +01:00
7ff2ad8188 (v0.8.0.9006) small typos 2019-10-27 00:31:59 +02:00
412077a6f2 (v0.8.0.9005) fix unit tests 2019-10-26 22:21:26 +02:00
d2e8249edd (v0.8.0.9004) added MDR guideline by Magiorakos et al. 2019-10-26 21:56:41 +02:00
c01dc8a5b7 (v0.8.0.9003) printing fix for AB columns 2019-10-23 15:44:11 +02:00
3e5ab53209 (v0.8.0.9002) eucast_rules() fix for S. maltophilia 2019-10-23 14:48:25 +02:00
666126cd5e (v0.8.0.9001) guideline text on as.rsi() 2019-10-21 14:12:28 +02:00
1b8e2366f7 (v0.8.0.9000) website update 2019-10-16 22:47:48 +02:00
ca13cc7633 v0.8.0 2019-10-15 22:19:34 +02:00
10e6b225e7 (v0.7.1.9107) v0.8.0 2019-10-15 14:35:23 +02:00
2c0f3534bf (v0.7.1.9106) v0.8.0 2019-10-13 09:31:58 +02:00
1736fb62d6 (v0.7.1.9105) another try 2019-10-12 10:08:55 +02:00
2eb4a42f3d (v0.7.1.9104) vignette fix 2019-10-12 09:15:27 +02:00
b2a08d056b (v0.7.1.9103) add lintr to CI 2019-10-11 19:16:49 +02:00
00cdb498a0 (v0.7.1.9102) lintr 2019-10-11 17:21:02 +02:00
59af355a89 (v0.7.1.9101) NEWS update, fix authors 2019-10-09 10:52:19 +02:00
c8f6b97847 (v0.7.1.9100) bug_drug speed, MIC levels 2019-10-08 22:21:33 +02:00
5dbff3e170 (v0.7.1.9098) mdro() unit test fix 2019-10-07 15:12:42 +02:00
f479dfce60 (v0.7.1.9097) mdro() examples fix 2019-10-07 14:57:27 +02:00
4e9c4c1b4e (v0.7.1.9096) German guideline for mdro() 2019-10-07 14:32:06 +02:00
1e260d85c8 (v0.7.1.9095) get_column_abx() fix 2019-10-06 22:19:26 +02:00
3d5692219e (v0.7.1.9094) get_column_abx() improvement 2019-10-06 21:44:08 +02:00
b6653a620a (v0.7.1.9093) as.ab() fix 2019-10-06 21:07:38 +02:00
8bc4081b03 (v0.7.1.9092) as.ab() improvements 2019-10-04 15:36:12 +02:00
edb599ae0b (v0.7.1.9091) percentage from clean pkg 2019-09-30 16:45:36 +02:00
b39e7feae6 (v0.7.1.9090) factor levels of mdr_tb 2019-09-26 21:58:06 +02:00
b9f01d686e (v0.7.1.9089) eucast file update 2019-09-25 22:37:40 +02:00
99d0fe76dd (v0.7.1.9088) bug_drug improvement 2019-09-25 15:43:22 +02:00
04cd0d25db (v0.7.1.9087) small fix 2019-09-23 23:09:50 +02:00
38336d7408 (v0.7.1.9086) small fix 2019-09-23 23:00:18 +02:00
ad5f211a8f (v0.7.1.9085) Salmonella fix 2019-09-23 21:24:37 +02:00
76dc948067 (v0.7.1.9084) CI fix 2019-09-23 20:55:54 +02:00
8ce252fbc5 (v0.7.1.9083) LIS code improvement 2019-09-23 17:32:05 +02:00
a8c6b8f9c4 (v0.7.1.9082) CI fix 2019-09-23 14:37:24 +02:00
64d9829030 (v0.7.1.9081) bug_drug fixes 2019-09-23 13:53:50 +02:00
66d405ff57 (v0.7.1.9080) new LIS codes 2019-09-22 17:19:59 +02:00
57b0bd92a0 (v0.7.1.9079) small fixes 2019-09-22 12:41:45 +02:00
46b61e9a70 (v0.7.1.9078) unit tests 2019-09-20 14:50:02 +02:00
40e6b3e8f6 (v0.7.1.9077) mo codes fix 2019-09-20 14:18:29 +02:00
3596adb295 (v0.7.1.9076) mo codes 2019-09-20 12:33:05 +02:00
e2aa4f996b (v0.7.1.9075) new microorganism codes 2019-09-18 15:46:09 +02:00
f553a08a7b (v0.7.1.9074) CI updates 2019-09-16 12:00:56 +02:00
398c5bdc4f (v0.7.1.9073) as.mo() self-learning algorithm 2019-09-15 22:57:30 +02:00
cd178ee569 (v0.7.1.9072) key_antibiotics() for foreign systems 2019-09-12 15:08:53 +02:00
b5d2a08401 (v0.7.1.9071) p_symbol() 2019-09-03 09:47:39 +02:00
06b6266366 (v0.7.1.9070) na.rm for age(), age_groups() 2019-09-02 15:17:41 +02:00
c7be72f0ce (v0.7.1.9069) documentation update 2019-09-01 13:16:57 +02:00
88ee1b7268 (v0.7.1.9068) gramstain to freq() 2019-08-30 14:50:56 +02:00
34a82d091e (v0.7.1.9067) honor info 2019-08-28 17:12:48 +02:00
e2b78fa428 (v0.7.1.9066) bug-drug fix 2019-08-27 23:00:00 +02:00
248638ad91 (v0.7.1.9065) bug-drug fix 2019-08-27 22:41:09 +02:00
f3276592b7 (v0.7.1.9064) bug-drug fix 2019-08-27 19:15:04 +02:00
93be16484b (v0.7.1.9063) septic_patients -> example_isolates 2019-08-27 16:45:42 +02:00
7a6fce4eb8 (v0.7.1.9062) mo/ab assignment improvements 2019-08-26 16:02:03 +02:00
13d4fef801 (v0.7.1.9061) mo_property improvement 2019-08-26 10:03:37 +02:00
05dcb43660 (v0.7.1.9060) globals 2019-08-25 23:25:12 +02:00
e46cb0399f (v0.7.1.9059) bug_drug_combinations 2019-08-25 22:53:22 +02:00
7c069145ac (v0.7.1.9058) as.mo() improvement 2019-08-20 11:40:54 +02:00
04d49a62af (v0.7.1.9057) get_column_abx() improvement 2019-08-15 17:09:27 +02:00
920212e815 (v0.7.1.9056) mo and ab subsetting 2019-08-14 14:57:06 +02:00
7108454ba5 (v0.7.1.9055) algorithm improvements 2019-08-13 16:15:08 +02:00
5f2733349e (v0.7.1.9038) mo algorithm inprovements 2019-08-12 19:07:15 +02:00
c44c5e3913 (v0.7.1.9037) CI and global env fix 2019-08-12 15:34:49 +02:00
bd252a2984 (v0.7.1.9036) preserve ab/mo classes in subsetting 2019-08-12 14:48:09 +02:00
1d423cca89 (v0.7.1.9035) cephalosporins and unit tests 2019-08-11 19:07:26 +02:00
3f5828e74a (v0.7.1.9034) mo.codes fix for Dracunculus spp. 2019-08-09 23:45:26 +02:00
6598c5615d (v0.7.1.9033) 5000 new fungi 2019-08-09 23:22:10 +02:00
6a349bf757 (v0.7.1.9032) eucast_rules() improvements 2019-08-09 14:28:46 +02:00
1ce4b72dd2 (v0.7.1.9031) include_unknown for first_isolate() 2019-08-08 22:39:42 +02:00
22a206ffd8 (v0.7.1.9030) eucast_rules() fix 2019-08-08 15:52:07 +02:00
f67c739892 (v0.7.1.9029) unit test 2019-08-07 18:56:14 +02:00
bfa92eb166 (v0.7.1.9028) predict update 2019-08-07 15:58:32 +02:00
90c874025a (v0.7.1.9027) tibble printing 2019-08-07 15:37:39 +02:00
14c47da656 (v0.7.1.9026) NAMESPACE fix 2019-08-06 15:57:51 +02:00
3a1f960f89 (v0.7.1.9024) eucast_rules() fix, new MOs 2019-08-06 14:39:22 +02:00
85b62aaf8f (v0.7.1.9023) wrong percentage in as.mo() 2019-08-04 17:41:12 +02:00
643c5ed807 (v0.7.1.9022) CI fix for codecov 2019-08-04 11:33:56 +02:00
d6ab3896a1 (v0.7.1.9021) CI fix for resistance_predict 2019-08-04 10:48:41 +02:00
4f3ef53c78 (v0.7.1.9020) CI fix 2 2019-08-03 21:51:08 +02:00
a6606d334c (v0.7.1.9019) CI fix 2019-07-30 19:20:13 +02:00
2a62c3d62a (v0.7.1.9018) deps 2019-07-30 13:12:40 +02:00
ec0ca20dee (v0.7.1.9017) deps 2019-07-29 21:20:26 +02:00
b7e2d7b9b8 (v0.7.1.9016) deps 2019-07-29 17:34:57 +02:00
240f03a672 (v0.7.1.9015) Remove freq() 2019-07-29 13:33:48 +02:00
9ac5a34b36 (v0.7.1.9014) MO codes update 2019-07-16 16:14:11 +02:00
c652c6913f (v0.7.1.9013) guess_mo_ab speed improvement 2019-07-11 13:39:18 +02:00
68230d0712 (v0.7.1.90012) mo_shortname fix 2019-07-10 21:36:51 +02:00
b452de2fe4 (v0.7.1.9010) eucast informative text in verbose mode 2019-07-09 13:36:03 +02:00
b15d59cf03 (v0.7.1.9009) note for WHOCC 2019-07-09 11:22:46 +02:00
d9e257f8db (v0.7.1.9008) ab update 2019-07-04 19:08:18 +02:00
c57ad26c5b (v0.7.1.9007) mdro update 2019-07-04 15:26:07 +02:00
4ff20af123 (v0.7.1.9006) new rsi calculations, atc class removal 2019-07-02 16:48:52 +02:00
156d550895 (v0.7.1.9005) new rsi calculations, atc class removal 2019-07-01 14:03:15 +02:00
65c6702b21 (v0.7.1.9004) atc class removal 2019-06-27 11:57:45 +02:00
6013fbefae (v0.7.1.9003) website update 2019-06-23 21:35:17 +02:00
f2d7a19118 (v0.7.1.9002) website update 2019-06-23 17:44:36 +02:00
78ec32b990 v0.7.1 2019-06-23 17:41:31 +02:00
278244140c (v0.7.0.9015) vignette fix 2019-06-22 21:33:13 +02:00
b94638d53e (v0.7.0.9014) unit tests 2019-06-22 20:14:06 +02:00
c9156c004a (v0.7.0.9013) mo_synonym fix 2019-06-22 14:49:12 +02:00
409397a337 (v0.7.0.9012) unit test 2019-06-18 19:28:26 +02:00
9c39c35f86 (v0.7.0.9010) mo_synonyms, plot/barplot fixes 2019-06-16 21:42:40 +02:00
980be2b22d (v0.7.0.9009) global note 2019-06-13 16:40:35 +02:00
254745061c (v0.7.0.9008) T. vaginalis, rsi_df 2019-06-13 14:28:46 +02:00
699e87ab4a (v0.7.0.9007) renamed notes fix 2019-06-12 16:08:20 +02:00
44ab53128e (v0.7.0.9006) ab algorithm fix for ATC codes 2019-06-11 15:31:32 +02:00
8f674e19bb (v0.7.0.9005) ab algorithm update 2019-06-11 14:18:25 +02:00
f6c47c8c88 (v0.7.0.9004) pkgdown update 2019-06-09 08:57:54 +02:00
ec48f1d83b (v0.7.0.9003) scale fix 2019-06-08 23:50:06 +02:00
f50d3a5ba1 (v0.7.0.9002) scale fix 2019-06-08 15:00:28 +02:00
f02679fb63 (v0.7.0.9001) new pathovars, small fixes 2019-06-07 22:47:37 +02:00
04c75e8e36 (v0.7.0.9000) new dev version 2019-06-03 20:52:24 +02:00
270aa0dd33 v0.7.0 2019-06-03 17:45:22 +02:00
bd73988f15 (v0.6.1.9053) prerelease fixes 2019-06-02 19:23:19 +02:00
8de0495008 (v0.6.1.9052) website update 2019-06-01 21:28:18 +02:00
5608b27c7c (v0.6.1.9051) support staged install 2019-06-01 20:54:56 +02:00
2667fff8a7 (v0.6.1.9050) support staged install 2019-06-01 20:40:49 +02:00
a665612cb8 (v0.6.1.9049) data creation fix 2019-05-31 21:20:16 +02:00
4bac768557 (v0.6.1.9048) data creation fox 2019-05-31 21:01:14 +02:00
0a6580b4eb (v0.6.1.9047) ggplot fix 2019-05-31 20:48:22 +02:00
4ed27c7e7a (v0.6.1.9046) ggplot fix 2019-05-31 20:25:57 +02:00
f03f71eced (v0.6.1.9045) age test fix 2019-05-31 14:40:15 +02:00
493ae2ba0c (v0.6.1.9044) first_isolate fix for species 2019-05-31 14:25:11 +02:00
1f8ee3ec3e (v0.6.1.9043) age doc fix 2019-05-30 08:51:38 +02:00
8b5e2b030b added boxplot for (grouped) freq() 2019-05-29 19:56:17 +02:00
27380fa021 fixes for microorganisms.codes 2019-05-28 16:50:40 +02:00
3688fcaabf doc fix 2019-05-23 17:59:43 +02:00
bbf8b611e3 doc fix 2019-05-23 17:35:58 +02:00
60983a1640 added mdr_tb() 2019-05-23 16:58:59 +02:00
07d26cd485 faster determination of abx 2019-05-20 19:12:41 +02:00
6eb08a2ea3 new git flow to repository 2019-05-20 14:16:53 +02:00
4ca00e1868 speed improvement eucast_rules(), support more old MO codes 2019-05-20 12:00:18 +02:00
c3ae6b7699 freq fix 2019-05-17 09:09:18 +02:00
4c3cf85a65 ab_info, other bug fixes 2019-05-16 21:20:00 +02:00
38a4421450 CI tests 2019-05-13 10:10:16 +02:00
fcc77164e9 mdro fix 2019-05-11 23:30:10 +02:00
68cc7ef0d0 new antibiotics 2019-05-10 16:44:59 +02:00
73f1ee1159 freq/age fix 2019-04-11 00:54:48 +02:00
cffb7787d8 cfta streptococci 2019-04-09 10:34:40 +02:00
9e20ade0a7 ci update 2019-04-06 20:03:46 +02:00
c6bf982ba6 ci update 2019-04-06 16:50:59 +02:00
0ff299394a an another go 2019-04-06 16:23:43 +02:00
501f5db020 prevent staged install 2019-04-06 11:09:06 +02:00
fbc9191b13 new EUCAST rules algorithm 2019-04-05 18:47:39 +02:00
248e508e9b CI - test also on r-devel 2019-03-29 14:34:39 +01:00
b25f2d6213 v0.6.1 2019-03-28 21:33:28 +01:00
429814c29b v0.6.0 2019-03-27 11:22:36 +01:00
29f444543d added Becker 2019 2019-03-26 14:24:03 +01:00
c6a12266e7 DSMZ data 2019-03-18 14:29:41 +01:00
fdffc2791b memory for as.mo() 2019-03-15 13:57:25 +01:00
504a042fba uncertainty levels, new WHONET codes 2019-03-12 12:19:27 +01:00
b319b89750 WHONET fix 2019-03-09 08:21:00 +01:00
5c7a061a5d filter_ab_class fix 2019-03-06 09:32:48 +01:00
74e0ae21fd con WHONET, filter ab class 2019-03-05 22:47:42 +01:00
e835525cf6 unknown codes, rsi fix 2019-03-02 22:47:04 +01:00
c5efb272fd mo_source improvement 2019-03-01 09:34:04 +01:00
2565b60024 rlang dependency, new fungi 2019-02-28 13:56:28 +01:00
54162522bd age_groups fix 2019-02-27 11:36:12 +01:00
f9ded23023 as.mo improvement 2019-02-26 12:33:26 +01:00
0ec76cfa98 as.mo improvement 2019-02-25 10:42:57 +01:00
1a6314769b as.mo improvement 2019-02-23 16:02:31 +01:00
41ad7a22c8 mo_rank mo_url, added Tremellales 2019-02-22 22:12:10 +01:00
68a9a35ed6 algorithm update 2019-02-21 18:55:52 +01:00
13120f465f website update 2019-02-20 13:57:23 +01:00
fb1fc3686c Catalogue of life 2019-02-20 00:04:48 +01:00
54f8258f8c Catalogue of Life, replaces ITIS 2019-02-18 02:33:37 +01:00
9209787a53 SPSS tutorial 2019-02-14 15:18:17 +01:00
efb2af9e3a benchmarks plots 2019-02-14 10:23:51 +01:00
ae44b185e6 fix freq length calculation 2019-02-13 17:14:59 +01:00
30ff770c93 freq update 2019-02-12 15:38:31 +01:00
76ed26d27e resistance predict update 2019-02-11 10:27:10 +01:00
70105086c8 as.rsi warning, site update 2019-02-10 08:42:28 +01:00
c56b179857 as.rsi warning, site update 2019-02-09 22:16:24 +01:00
ed30312048 mo codes for WHONET 2019-02-08 16:06:54 +01:00
587e00b7be is.rsi.eligible update 2019-02-04 12:24:07 +01:00
cd07d65734 freq and website update 2019-02-01 16:55:55 +01:00
0b3dc0231f freq fix 2019-01-30 16:00:55 +01:00
3efb54d016 freq update 2019-01-29 20:20:09 +01:00
6aae206320 WHONET/EARS-Net support 2019-01-29 00:06:50 +01:00
f6336fdd89 quasiquotation for freq() 2019-01-28 11:20:32 +01:00
e76961a66b less deps 2019-01-27 19:30:40 +01:00
b39055c018 deprecated fix 2019-01-27 00:33:58 +01:00
f836722269 atc_ functions 2019-01-26 23:22:56 +01:00
f4ff98b470 WHO update, antibiotics update 2019-01-25 13:18:41 +01:00
46dcc7e2e8 set_mo_source 2019-01-21 15:53:01 +01:00