 dr. M.S. (Matthijs) Berends
|
1a0dc4bf46
|
revert back to pre-antibiogram
|
2023-02-09 13:07:39 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
aa48c6bf53
|
pm fixes
|
2023-02-08 16:51:41 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
822e9de82c
|
pm update, unit test fix?
|
2023-02-08 13:48:06 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
4a54d59f70
|
tinytest
|
2023-02-06 14:36:31 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
75a4c1ef3e
|
fixes2
|
2023-02-06 14:34:38 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f7dd890b79
|
fixes
|
2023-02-06 12:38:52 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
9e99e66f01
|
use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi
|
2023-02-06 11:57:22 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
4b133d4c96
|
unit tests
|
2023-01-30 17:24:03 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
89a577805f
|
prelim fix for g.test
|
2023-01-30 12:26:48 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
126afb01a4
|
unit tests 2
|
2023-01-24 16:31:00 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c0d8888ab7
|
unit tests
|
2023-01-24 16:09:48 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
7b00b4f34a
|
unit tests
|
2023-01-24 14:52:15 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
830c67f1bf
|
documentation, unit tests
|
2023-01-24 10:20:27 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
eef00069fd
|
add all options to documentation
|
2023-01-23 20:07:57 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
19fd0ef121
|
sort sir history
|
2023-01-23 15:01:21 +01:00 |
Dr. Matthijs Berends
|
98e62c9af2
|
Replace RSI with SIR
|
2023-01-21 23:47:20 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
24b12024ce
|
unit test fix
|
2023-01-20 09:45:03 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
593d740b84
|
documentation, file permissions
|
2023-01-19 12:54:53 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
b94bc6c67b
|
adding mo fixes
|
2023-01-14 19:50:25 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
ca79068604
|
Fix for adding MO's
|
2023-01-14 17:10:10 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
33f269e2f4
|
contrib update
|
2023-01-12 23:16:05 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
51906d6f97
|
no overwriting taxonomy when adding microorganisms
|
2023-01-12 11:33:28 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
1029aa2fdc
|
algorithm improvement
|
2023-01-07 14:53:14 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
08fe5a88c0
|
documentation
|
2023-01-07 01:54:46 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2375bfdcb5
|
documentation
|
2023-01-07 01:51:19 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
84ed8c32bb
|
documentation
|
2023-01-06 19:21:04 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
cf16bc7de1
|
unit tests
|
2023-01-06 13:45:20 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
86e28bafce
|
add mo_pathogenicity
|
2023-01-06 13:35:37 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
4801a6067e
|
unit tests
|
2023-01-06 11:22:02 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
8a0a0d4682
|
unit tests
|
2023-01-06 10:08:25 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
268ec31d92
|
unit tests
|
2023-01-05 18:21:48 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
5361c0b2a0
|
limit GitHub runners
|
2023-01-05 15:41:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
51c0f0814e
|
new setup unit tests
|
2023-01-05 15:03:18 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
a98d0d75ea
|
styler dep
|
2023-01-05 14:46:44 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
a0ee86536a
|
unit tests
|
2023-01-05 14:43:18 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
77d9cf1936
|
documentation
|
2022-12-30 13:02:37 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e4ea96cbf9
|
fix for R < 3.4
|
2022-12-30 12:57:27 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
1db74e86cd
|
good start-up practice
|
2022-12-29 16:23:57 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
61c0bdb7af
|
documentation
|
2022-12-28 15:04:59 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
ba3b237bdf
|
custom mo update
|
2022-12-28 14:20:10 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
fe09e9252b
|
custom mo update
|
2022-12-27 16:03:03 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f619fb683b
|
support new mo codes
|
2022-12-27 15:16:15 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e493248ea5
|
unit test and news file
|
2022-12-21 09:12:53 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
4c42a43f7d
|
fixes
|
2022-12-20 22:41:39 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6f4bb603ec
|
unit tests
|
2022-12-20 22:18:50 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f0a2cdbf5e
|
update mo algorithm
|
2022-12-20 16:14:04 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
b1b7534c78
|
incorporate Bartlett et al (2022)
|
2022-12-19 15:32:41 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
23fe427cbc
|
Fixes for Salmonella
|
2022-12-17 14:31:33 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
5f3a7694aa
|
microorganisms update, added Salmonella groups
|
2022-12-16 16:10:43 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
8da2467209
|
updated taxonomy
|
2022-12-12 00:14:56 +01:00 |