 dr. M.S. (Matthijs) Berends
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1a0dc4bf46
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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822e9de82c
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pm update, unit test fix?
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2023-02-08 13:48:06 +01:00 |
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dr. M.S. (Matthijs) Berends
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9e99e66f01
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use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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dr. M.S. (Matthijs) Berends
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eef00069fd
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add all options to documentation
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2023-01-23 20:07:57 +01:00 |
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dr. M.S. (Matthijs) Berends
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19fd0ef121
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sort sir history
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2023-01-23 15:01:21 +01:00 |
Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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dr. M.S. (Matthijs) Berends
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84ed8c32bb
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documentation
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2023-01-06 19:21:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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a0ee86536a
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unit tests
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2023-01-05 14:43:18 +01:00 |
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dr. M.S. (Matthijs) Berends
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f619fb683b
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support new mo codes
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2022-12-27 15:16:15 +01:00 |
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dr. M.S. (Matthijs) Berends
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23fe427cbc
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Fixes for Salmonella
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2022-12-17 14:31:33 +01:00 |
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dr. M.S. (Matthijs) Berends
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f6862a139d
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expert rules 12.0
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2022-11-14 15:20:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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7ca44fb756
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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85e2fbe4a3
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remove warnings from unit tests
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2022-10-19 11:47:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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76bcd3528c
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move object assignment to AMR_env
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2022-10-14 13:02:50 +02:00 |
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Dr. Matthijs Berends
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cd2acc4a29
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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4d050aef7c
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styled, unit test fix
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2022-08-28 10:31:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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303d61b473
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new tibble export
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2022-08-27 20:49:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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3864ab2fb8
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Feather and Parquet files
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2022-08-26 22:25:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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952d16de33
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new, automated website
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2022-08-21 16:37:20 +02:00 |
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dr. M.S. (Matthijs) Berends
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3b2b2be5f8
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(v1.8.0.9002) as.rsi() cleanup, more informative warnings
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2022-03-02 15:38:55 +01:00 |
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dr. M.S. (Matthijs) Berends
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25cef46c59
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(v1.8.0) prerelease 1.8.0
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2021-12-23 18:56:28 +01:00 |
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dr. M.S. (Matthijs) Berends
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77ba4318ea
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(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
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2021-12-11 13:41:31 +01:00 |
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dr. M.S. (Matthijs) Berends
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e18c49ed93
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(v1.7.1.9063) not_intrinsic_resistant
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2021-12-09 10:48:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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694cf5ba77
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(v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup
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2021-11-28 23:01:26 +01:00 |
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dr. M.S. (Matthijs) Berends
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37e6e35ec4
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(v1.7.1.9051) updated taxonomy, updated git branch name
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2021-10-06 13:23:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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a2d249962f
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(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
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2021-08-16 21:54:34 +02:00 |
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dr. M.S. (Matthijs) Berends
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4e1efd902c
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(v1.7.1.9022) rely on vctrs for ab selectors
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2021-07-23 21:42:11 +02:00 |
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dr. M.S. (Matthijs) Berends
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1908e7cc7a
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(v1.7.1.9000) ab_class update, unit tests
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2021-06-04 21:07:55 +02:00 |
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dr. M.S. (Matthijs) Berends
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6920c0be41
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(v1.6.0.9047) filter_ab_class() fixes
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2021-05-18 11:29:31 +02:00 |
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dr. M.S. (Matthijs) Berends
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655b813e99
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(v1.6.0.9022) unit test fix
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2021-05-13 15:56:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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29dbfa2f49
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(v1.6.0.9021) join functions update
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2021-05-12 18:15:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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12a8d59869
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(v1.6.0.9015) italicise_taxonomy
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2021-05-03 10:47:32 +02:00 |
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dr. M.S. (Matthijs) Berends
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70b803dbb6
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(v1.6.0.9008) unlike, bugfix for col_mo naming
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2021-04-23 09:59:36 +02:00 |
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dr. M.S. (Matthijs) Berends
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de66eccf43
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(v1.6.0.9006) eucast rules fix for Ochrobactrum anthropi
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2021-04-16 14:59:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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6ff5448192
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(v1.6.0.9001) support Inf for episodes
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2021-04-12 12:35:13 +02:00 |
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dr. M.S. (Matthijs) Berends
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7a3139f7cc
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(v1.6.0.9000) custom EUCAST rules
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2021-04-07 08:37:42 +02:00 |
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dr. M.S. (Matthijs) Berends
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4e0a9533ad
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(v1.5.0.9041) SNOMED update
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2021-03-11 21:42:30 +01:00 |
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dr. M.S. (Matthijs) Berends
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5ef8cb41a7
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(v1.5.0.9021) improve speed of %like%
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2021-02-21 20:15:09 +01:00 |
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dr. M.S. (Matthijs) Berends
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4a84894f79
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(v1.5.0.9016) only_rsi_columns update, documentation
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2021-02-08 14:18:42 +01:00 |
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dr. M.S. (Matthijs) Berends
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8fda473e49
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(v1.5.0.9015) unit test fix, grouped first isolates
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2021-02-04 16:48:16 +01:00 |
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dr. M.S. (Matthijs) Berends
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2eca8c3f01
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(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
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2021-02-02 23:57:35 +01:00 |
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dr. M.S. (Matthijs) Berends
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331c1f6508
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(v1.5.0.9012) ampc_cephalosporin_resistance for I
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2021-01-25 21:58:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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24eb4453db
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(v1.5.0.9011) small dosage update
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2021-01-24 23:27:11 +01:00 |
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dr. M.S. (Matthijs) Berends
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1ba44776a1
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(v1.5.0.9008) Internal data sets to pkg, speed for auto col determination
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2021-01-22 10:20:41 +01:00 |
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dr. M.S. (Matthijs) Berends
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4eab095306
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(v1.5.0.9006) major documentation update
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2021-01-18 16:57:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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7ebc534ccd
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(v1.5.0.9003) verbose output of mdro()
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2021-01-15 22:44:52 +01:00 |
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dr. M.S. (Matthijs) Berends
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bc00470dca
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(v1.5.0.9001) more informative argument errors
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2021-01-14 14:41:44 +01:00 |
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dr. M.S. (Matthijs) Berends
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d014955ce0
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(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
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2021-01-12 22:08:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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3b84b8be75
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v1.5.0
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2021-01-06 11:16:17 +01:00 |
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dr. M.S. (Matthijs) Berends
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526f8afb08
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(v1.4.0.9052) replaced all sapply's with type-safe vapply's
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2020-12-28 22:24:33 +01:00 |