dr. M.S. (Matthijs) Berends
1b84564d36
(v1.8.1.9011) update prevalence of some genera
2022-06-03 12:43:25 +02:00
dr. M.S. (Matthijs) Berends
70a07bad39
(v1.8.1.9010) random when pkg not loaded
2022-05-16 12:52:50 +02:00
dr. M.S. (Matthijs) Berends
2c5bc73ed6
(v1.8.1.9009) random when pkg not loaded
2022-05-16 09:29:46 +02:00
dr. M.S. (Matthijs) Berends
58ed15e7ac
(v1.8.1.9008) website update
2022-05-11 10:26:58 +02:00
dr. M.S. (Matthijs) Berends
6de5375256
(v1.8.1.9007) website update
2022-05-11 10:10:31 +02:00
dr. M.S. (Matthijs) Berends
859224e9d0
(v1.8.1.9006) added EUCAST 2022 and CLSI 2022
2022-05-10 21:34:30 +02:00
dr. M.S. (Matthijs) Berends
680e8e7a41
(v1.8.1.9005) as.rsi() fix for EUCAST
2022-05-10 17:01:37 +02:00
dr. M.S. (Matthijs) Berends
d4e22069bc
(v1.8.1.9004) fix for table() on MICs
2022-05-09 21:33:27 +02:00
dr. M.S. (Matthijs) Berends
1c891cc90c
(v1.8.1.9003) set_mo_source() fix
2022-05-09 20:36:44 +02:00
dr. M.S. (Matthijs) Berends
152db9d1b5
(v1.8.1.9002) fix for table() on MICs
2022-05-09 17:08:40 +02:00
dr. M.S. (Matthijs) Berends
4754848e96
(v1.8.1.9001) update unit tests, fixes #53
2022-04-08 11:02:45 +02:00
dr. M.S. (Matthijs) Berends
641b88c814
website update
2022-03-27 09:37:55 +02:00
dr. M.S. (Matthijs) Berends
7b0f1596bd
(v1.8.0.9010) as.mo improvement
2022-03-15 17:35:02 +01:00
dr. M.S. (Matthijs) Berends
0fb9a1b194
prerelease 1.8.1
2022-03-14 16:43:15 +01:00
dr. M.S. (Matthijs) Berends
45e9546538
prerelease 1.8.1
...
Merge branch 'development' of https://github.com/msberends/AMR into development
# Conflicts:
# docs/articles/AMR.html
# docs/articles/AMR_files/figure-html/disk_plots-1.png
# docs/articles/AMR_files/figure-html/disk_plots_mo_ab-1.png
# docs/articles/AMR_files/figure-html/mic_plots-1.png
# docs/articles/AMR_files/figure-html/mic_plots-2.png
# docs/articles/AMR_files/figure-html/mic_plots_mo_ab-1.png
# docs/articles/AMR_files/figure-html/mic_plots_mo_ab-2.png
# docs/articles/AMR_files/figure-html/plot 1-1.png
# docs/articles/AMR_files/figure-html/plot 3-1.png
# docs/articles/AMR_files/figure-html/plot 4-1.png
# docs/articles/AMR_files/figure-html/plot 5-1.png
# docs/articles/EUCAST.html
# docs/articles/MDR.html
# docs/articles/PCA.html
# docs/articles/PCA_files/figure-html/unnamed-chunk-6-1.png
# docs/articles/PCA_files/figure-html/unnamed-chunk-7-1.png
# docs/articles/SPSS.html
# docs/articles/WHONET.html
# docs/articles/WHONET_files/figure-html/unnamed-chunk-7-1.png
# docs/articles/benchmarks.html
# docs/articles/benchmarks_files/figure-html/unnamed-chunk-4-1.png
# docs/articles/datasets.html
# docs/articles/resistance_predict.html
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-4-1.png
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-5-1.png
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-5-2.png
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-6-1.png
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-7-1.png
# docs/articles/welcome_to_AMR.html
# docs/news/index.html
# docs/pkgdown.yml
# docs/reference/AMR-deprecated.html
# docs/reference/AMR.html
# docs/reference/WHOCC.html
# docs/reference/WHONET.html
# docs/reference/antibiotics.html
# docs/reference/catalogue_of_life.html
# docs/reference/catalogue_of_life_version.html
# docs/reference/dosage.html
# docs/reference/example_isolates.html
# docs/reference/example_isolates_unclean.html
# docs/reference/g.test.html
# docs/reference/intrinsic_resistant.html
# docs/reference/microorganisms.codes.html
# docs/reference/microorganisms.html
# docs/reference/microorganisms.old.html
# docs/reference/rsi_translation.html
2022-03-14 16:37:37 +01:00
dr. M.S. (Matthijs) Berends
1b0983e382
(v1.8.1) prerelease 1.8.1
2022-03-14 16:36:10 +01:00
dr. M.S. (Matthijs) Berends
8c9feea087
website update
2022-03-12 19:53:29 +01:00
dr. M.S. (Matthijs) Berends
08d387b5ce
(v1.8.0.9005) as.rsi() fix
2022-03-10 19:33:25 +01:00
dr. M.S. (Matthijs) Berends
ad82bb4ce0
(v1.8.0.9004) MIC printing in tibbles
2022-03-03 21:11:02 +01:00
dr. M.S. (Matthijs) Berends
dedbe92322
(v1.8.0.9003) deps update
2022-03-02 23:16:37 +01:00
dr. M.S. (Matthijs) Berends
3b2b2be5f8
(v1.8.0.9002) as.rsi() cleanup, more informative warnings
2022-03-02 15:38:55 +01:00
dr. M.S. (Matthijs) Berends
25cef46c59
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
dr. M.S. (Matthijs) Berends
0cbf8f48b6
(v1.7.1.9071) rsi disk fix
2021-12-13 11:57:34 +01:00
dr. M.S. (Matthijs) Berends
578e7dfee9
(v1.7.1.9070) Better WHONET support
2021-12-13 10:18:28 +01:00
dr. M.S. (Matthijs) Berends
f90e27c1b0
(v1.7.1.9069) CLSI 2021 support
2021-12-12 11:36:58 +01:00
dr. M.S. (Matthijs) Berends
1e66a3daf3
(v1.7.1.9068) new logo, unit tests
2021-12-12 11:07:02 +01:00
dr. M.S. (Matthijs) Berends
56f1ce328a
(v1.7.1.9067) Support for Swedish and Russian
2021-12-12 09:42:03 +01:00
dr. M.S. (Matthijs) Berends
77ba4318ea
(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
2021-12-11 13:41:31 +01:00
dr. M.S. (Matthijs) Berends
e18c49ed93
(v1.7.1.9063) not_intrinsic_resistant
2021-12-09 10:48:25 +01:00
dr. M.S. (Matthijs) Berends
e63defe324
(v1.7.1.9062) website update
2021-12-06 11:12:30 +01:00
dr. M.S. (Matthijs) Berends
7965468ccd
(v1.7.1.9058) vars selection for set_ab_names()
2021-12-05 22:06:45 +01:00
dr. M.S. (Matthijs) Berends
694cf5ba77
(v1.7.1.9054) mdro() update - fixes #49 , first_isolate() speedup
2021-11-28 23:01:26 +01:00
dr. M.S. (Matthijs) Berends
37e6e35ec4
(v1.7.1.9051) updated taxonomy, updated git branch name
2021-10-06 13:23:57 +02:00
dr. M.S. (Matthijs) Berends
d6a916d70b
(v1.7.1.9030) unit test
2021-08-29 23:50:45 +02:00
dr. M.S. (Matthijs) Berends
a44283f998
(v1.7.1.9024) unit tests
2021-08-17 14:34:11 +02:00
dr. M.S. (Matthijs) Berends
a2d249962f
(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
2021-08-16 21:54:34 +02:00
dr. M.S. (Matthijs) Berends
4e1efd902c
(v1.7.1.9022) rely on vctrs for ab selectors
2021-07-23 21:42:11 +02:00
dr. M.S. (Matthijs) Berends
0ec81cc12e
(v1.7.1.9021) autoplot generics
2021-07-12 22:12:28 +02:00
dr. M.S. (Matthijs) Berends
6838f03bde
(v1.7.1.9020) autoplot generics
2021-07-12 20:24:49 +02:00
dr. M.S. (Matthijs) Berends
fc946564d1
(v1.7.1.9019) Morganella MIC in EUCAST 2021
2021-07-12 12:28:41 +02:00
dr. M.S. (Matthijs) Berends
5ccb330b42
(v1.7.1.9018) translation fix
2021-07-11 13:20:45 +02:00
dr. M.S. (Matthijs) Berends
39d97ab53b
(v1.7.1.9017) ab selector error
2021-07-08 23:05:45 +02:00
dr. M.S. (Matthijs) Berends
b228eb1536
(v1.7.1.9016) only_treatable ab selectors
2021-07-08 22:23:28 +02:00
dr. M.S. (Matthijs) Berends
625a6fb304
(v1.7.1.9015) removed S3 taxonomic_name again
2021-07-07 20:34:05 +02:00
dr. M.S. (Matthijs) Berends
ad10693a1a
(v1.7.1.9014) rep() for S3 classes
2021-07-06 16:35:14 +02:00
dr. M.S. (Matthijs) Berends
16b4c74d44
(v1.7.1.9013) temp fix for ggplot2 bug #4511
2021-07-04 22:10:46 +02:00
dr. M.S. (Matthijs) Berends
350dbe6a11
(v1.7.1.9012) update unit tests
2021-07-04 20:25:30 +02:00
dr. M.S. (Matthijs) Berends
5b5741f681
(v1.7.1.9011) subsetting taxonomy fix
2021-07-04 15:26:50 +02:00
dr. M.S. (Matthijs) Berends
3bd50710e8
(v1.7.1.9010) fix for count_* and proportion_*
2021-07-04 12:00:41 +02:00
dr. M.S. (Matthijs) Berends
3e26929838
(v1.7.1.9009) fix for ab class selectors
2021-07-03 21:56:53 +02:00
