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1b62bab007
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(v1.7.1.9025) unit tests
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2021-08-18 23:19:38 +02:00 |
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a44283f998
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(v1.7.1.9024) unit tests
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2021-08-17 14:34:11 +02:00 |
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a2d249962f
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(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
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2021-08-16 21:54:34 +02:00 |
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4e1efd902c
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(v1.7.1.9022) rely on vctrs for ab selectors
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2021-07-23 21:42:11 +02:00 |
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0ec81cc12e
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(v1.7.1.9021) autoplot generics
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2021-07-12 22:12:28 +02:00 |
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6838f03bde
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(v1.7.1.9020) autoplot generics
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2021-07-12 20:24:49 +02:00 |
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fc946564d1
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(v1.7.1.9019) Morganella MIC in EUCAST 2021
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2021-07-12 12:28:41 +02:00 |
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5ccb330b42
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(v1.7.1.9018) translation fix
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2021-07-11 13:20:45 +02:00 |
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39d97ab53b
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(v1.7.1.9017) ab selector error
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2021-07-08 23:05:45 +02:00 |
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b228eb1536
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(v1.7.1.9016) only_treatable ab selectors
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2021-07-08 22:23:28 +02:00 |
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625a6fb304
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(v1.7.1.9015) removed S3 taxonomic_name again
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2021-07-07 20:34:05 +02:00 |
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ad10693a1a
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(v1.7.1.9014) rep() for S3 classes
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2021-07-06 16:35:14 +02:00 |
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16b4c74d44
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(v1.7.1.9013) temp fix for ggplot2 bug #4511
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2021-07-04 22:10:46 +02:00 |
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350dbe6a11
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(v1.7.1.9012) update unit tests
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2021-07-04 20:25:30 +02:00 |
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5b5741f681
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(v1.7.1.9011) subsetting taxonomy fix
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2021-07-04 15:26:50 +02:00 |
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3bd50710e8
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(v1.7.1.9010) fix for count_* and proportion_*
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2021-07-04 12:00:41 +02:00 |
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3e26929838
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(v1.7.1.9009) fix for ab class selectors
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2021-07-03 21:56:53 +02:00 |
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c8491d07f8
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(v1.7.1.9008) unit tests
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2021-06-23 10:19:38 +02:00 |
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95050ee3e0
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(v1.7.1.9007) Updated antibiotics dataset, fixes #41
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2021-06-23 10:03:17 +02:00 |
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1dc9d237f6
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(v1.7.1.9006) unit tests
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2021-06-22 13:09:41 +02:00 |
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d04e83f494
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(v1.7.1.9005) ab class selectors for R-3.0 and R-3.1
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2021-06-22 12:16:42 +02:00 |
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c44d9392ca
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(v1.7.1.9004) more extensive unit tests
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2021-06-15 10:51:04 +02:00 |
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556bf0014d
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(v1.7.1.9003) unit test
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2021-06-14 22:37:05 +02:00 |
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99be4c7e7e
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(v1.7.1.9002) ab class selectors update
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2021-06-14 22:04:04 +02:00 |
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683a0e748a
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(v1.7.1.9001) unit tests
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2021-06-05 15:12:01 +02:00 |
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1908e7cc7a
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(v1.7.1.9000) ab_class update, unit tests
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2021-06-04 21:07:55 +02:00 |
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7e70403efb
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(v1.7.1) New CRAN release
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2021-06-03 15:19:21 +02:00 |
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279376fccb
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(v1.7.0.9002) old MO codes
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2021-06-01 16:36:33 +02:00 |
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bef0f42f66
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(v1.7.0.9001) CLSI 2020 guideline
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2021-06-01 15:33:06 +02:00 |
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f406319503
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(v1.7.0.9000) package size
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2021-05-30 22:14:38 +02:00 |
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f1d9b489c5
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(v1.7.0) unit tests
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2021-05-26 14:04:12 +02:00 |
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41d279daa1
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(v1.7.0) v1.7.0
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2021-05-26 11:10:34 +02:00 |
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ac73a8d849
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v1.7.0
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2021-05-24 15:29:17 +02:00 |
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e5599bc694
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(v1.6.0.9065) unit tests
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2021-05-24 11:01:32 +02:00 |
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4fbf9e1720
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(v1.6.0.9064) prepare new release
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2021-05-24 09:34:08 +02:00 |
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a13fd98e8b
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(v1.6.0.9063) prepare new release
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2021-05-24 09:00:11 +02:00 |
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06302d296a
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(v1.6.0.9062) code consistency
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2021-05-24 00:06:28 +02:00 |
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07939b1a14
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(v1.6.0.9061) age() update
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2021-05-23 23:11:16 +02:00 |
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fa2f5214b9
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(v1.6.0.9060) unit tests
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2021-05-22 10:05:59 +02:00 |
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0b1f59edec
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(v1.6.0.9058) unit tests
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2021-05-22 08:58:51 +02:00 |
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65a8b58aa6
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(v1.6.0.9056) support codecov again
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2021-05-21 20:30:48 +02:00 |
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b210f1327c
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(v1.6.0.9055) support codecov again
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2021-05-21 20:20:51 +02:00 |
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fecc5d183c
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(v1.6.0.9054) unit tests
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2021-05-20 15:06:08 +02:00 |
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69a656abc0
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(v1.6.0.9053) unit tests
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2021-05-20 13:42:17 +02:00 |
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4a2a48b7c1
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(v1.6.0.9052) unit tests
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2021-05-20 11:42:39 +02:00 |
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04ef5b28e7
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(v1.6.0.9050) printing NA in custom_eucast_rules()
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2021-05-20 10:10:40 +02:00 |
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9a2879cba9
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(v1.6.0.9049) unit tests
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2021-05-20 00:07:27 +02:00 |
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2413efd5c1
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(v1.6.0.9048) ab selectors overhaul
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2021-05-19 22:55:42 +02:00 |
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6920c0be41
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(v1.6.0.9047) filter_ab_class() fixes
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2021-05-18 11:29:31 +02:00 |
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d67371acd1
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that 1 AM error
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2021-05-18 00:58:39 +02:00 |
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cfb7df823e
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(v1.6.0.9044) betalactams() selector
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2021-05-18 00:53:04 +02:00 |
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be49131ed7
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(v1.6.0.9043) translation update
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2021-05-17 19:43:01 +02:00 |
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83fec69a03
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(v1.6.0.9042) translation update
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2021-05-17 11:26:12 +02:00 |
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916df6e90c
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(v1.6.0.9041) filter_ab_class() fix
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2021-05-16 10:50:00 +02:00 |
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00496e45b7
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(v1.6.0.9040) unit tests
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2021-05-16 09:25:36 +02:00 |
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6c3ab19e3a
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(v1.6.0.9038) unit tests
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2021-05-15 23:47:36 +02:00 |
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3619c1327c
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(v1.6.0.9037) unit tests
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2021-05-15 23:36:02 +02:00 |
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73fb0374c3
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(v1.6.0.9036) unit tests
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2021-05-15 23:25:10 +02:00 |
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229e1bb407
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(v1.6.0.9035) unit tests
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2021-05-15 22:55:12 +02:00 |
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6e60ddf8d7
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(v1.6.0.9034) unit tests
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2021-05-15 22:35:57 +02:00 |
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86736ab9a7
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(v1.6.0.9032) unit tests
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2021-05-15 21:54:56 +02:00 |
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d8c91d5876
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(v1.6.0.9031) tinytest unit tests
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2021-05-15 21:36:22 +02:00 |
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9a381c8d18
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(v1.6.0.9030) new unit test flow
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2021-05-13 23:07:31 +02:00 |
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9ed2f6490f
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(v1.6.0.9028) new unit test flow
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2021-05-13 22:44:11 +02:00 |
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5b9fb8daf4
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(v1.6.0.9027) new unit test flow
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2021-05-13 21:54:15 +02:00 |
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b1d942be91
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(v1.6.0.9026) new unit test flow
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2021-05-13 21:16:22 +02:00 |
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aeea00881e
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(v1.6.0.9023) new unit test flow
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2021-05-13 19:31:47 +02:00 |
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655b813e99
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(v1.6.0.9022) unit test fix
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2021-05-13 15:56:12 +02:00 |
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29dbfa2f49
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(v1.6.0.9021) join functions update
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2021-05-12 18:15:03 +02:00 |
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3319fbae58
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(v1.6.0.9020) fix for skimr in dplyr 1.0.6
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2021-05-06 15:17:11 +02:00 |
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5899678b74
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(v1.6.0.9019) website fix
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2021-05-05 15:47:39 +02:00 |
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0aca719929
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(v1.6.0.9018) unit tests
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2021-05-04 15:20:43 +02:00 |
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5679ccdaf9
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(v1.6.0.9017) extra system codes
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2021-05-04 12:47:33 +02:00 |
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f33e61bac7
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(v1.6.0.9016) website update and c() fixes
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2021-05-03 13:06:43 +02:00 |
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12a8d59869
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(v1.6.0.9015) italicise_taxonomy
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2021-05-03 10:47:32 +02:00 |
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e405de079c
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(v1.6.0.9014) as.rsi() for numeric values
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2021-04-30 13:18:48 +02:00 |
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a9fd4aa49f
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(v1.6.0.9013) website update
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2021-04-29 17:16:30 +02:00 |
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5e06b20d43
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(v1.6.0.9012) unit tests
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2021-04-27 11:28:17 +02:00 |
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c5fff1c95c
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(v1.6.0.9011) unit tests
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2021-04-27 10:27:13 +02:00 |
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93683a4ae2
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(v1.6.0.9010) big first_isolate() update
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2021-04-26 23:57:37 +02:00 |
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5f9e7bd3ee
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(v1.6.0.9009) key_antibiotics update
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2021-04-23 16:13:26 +02:00 |
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70b803dbb6
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(v1.6.0.9008) unlike, bugfix for col_mo naming
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2021-04-23 09:59:36 +02:00 |
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c6289c3fc3
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(v1.6.0.9007) documentation custom eucast rules, progress bar as.mo
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2021-04-20 10:46:17 +02:00 |
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de66eccf43
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(v1.6.0.9006) eucast rules fix for Ochrobactrum anthropi
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2021-04-16 14:59:57 +02:00 |
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24ac18a99d
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(v1.6.0.9005) unit test fix
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2021-04-16 13:24:59 +02:00 |
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9842ef9660
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(v1.6.0.9004) unit test fix
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2021-04-16 12:02:57 +02:00 |
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00d3e437a8
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(v1.6.0.9003) like() fix
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2021-04-16 11:41:05 +02:00 |
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d277d58475
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(v1.6.0.9002) R-3.0 installation fix
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2021-04-12 14:24:40 +02:00 |
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6ff5448192
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(v1.6.0.9001) support Inf for episodes
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2021-04-12 12:35:13 +02:00 |
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7a3139f7cc
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(v1.6.0.9000) custom EUCAST rules
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2021-04-07 08:37:42 +02:00 |
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551f99dc8f
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v1.6.0
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2021-03-15 07:23:21 +01:00 |
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4e0a9533ad
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(v1.5.0.9041) SNOMED update
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2021-03-11 21:42:30 +01:00 |
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8d6ceb6a15
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(v1.5.0.9040) removal of isolate_identifier
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2021-03-08 09:44:17 +01:00 |
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a7c9b4c295
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(v1.5.0.9039) handle first isolates for missing antibiograms
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2021-03-08 02:38:32 +01:00 |
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450bbe5fb7
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(v1.5.0.9034) unit test fix
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2021-03-07 21:16:45 +01:00 |
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1bbf409fe5
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(v1.5.0.9033) as.rsi fix
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2021-03-07 16:15:43 +01:00 |
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850c123de7
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(v1.5.0.9032) All group generics for MICs
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2021-03-07 13:52:39 +01:00 |
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91dd755cac
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(v1.5.0.9031) math processing of MICs
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2021-03-05 15:36:39 +01:00 |
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0d29bde693
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(v1.5.0.9030) as.ab() speed improvement
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2021-03-05 10:32:09 +01:00 |
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0e0e3c4ffa
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(v1.5.0.9029) added missing families and orders
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2021-03-05 01:31:46 +01:00 |
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ddf88345f1
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(v1.5.0.9028) Updated taxonomy until March 2021
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2021-03-04 23:28:32 +01:00 |
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41f94cde97
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(v1.5.0.9027) website update
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2021-02-26 12:11:29 +01:00 |
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1737d56ae4
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(v1.5.0.9026) vignette update, support for GISA
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2021-02-25 12:31:12 +01:00 |
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a673407904
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(v1.5.0.9025) big plot and ggplot generics update
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2021-02-25 10:33:08 +01:00 |
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31ceba5441
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(v1.5.0.9024) more speed improvements
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2021-02-22 20:21:33 +01:00 |
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0fdabff1ba
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(v1.5.0.9023) mo properties speed improvement
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2021-02-21 23:19:40 +01:00 |
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062c49fca1
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(v1.5.0.9022) mo properties speed improvement
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2021-02-21 22:56:35 +01:00 |
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5ef8cb41a7
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(v1.5.0.9021) improve speed of %like%
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2021-02-21 20:15:09 +01:00 |
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daa12ced2c
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(v1.5.0.9020) translation fix
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2021-02-18 23:23:14 +01:00 |
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601ea7377c
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(v1.5.0.9019) use functions without loading AMR pkg
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2021-02-17 10:58:13 +01:00 |
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2dd0656355
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(v1.5.0.9018) fix unit tests
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2021-02-09 12:28:15 +01:00 |
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cb404492b2
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(v1.5.0.9017) unit testing
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2021-02-08 21:09:36 +01:00 |
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4a84894f79
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(v1.5.0.9016) only_rsi_columns update, documentation
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2021-02-08 14:18:42 +01:00 |
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8fda473e49
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(v1.5.0.9015) unit test fix, grouped first isolates
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2021-02-04 16:48:16 +01:00 |
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2eca8c3f01
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(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
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2021-02-02 23:57:35 +01:00 |
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20d638c193
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(v1.5.0.9013) updated tibble printing colours
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2021-01-28 16:09:30 +01:00 |
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331c1f6508
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(v1.5.0.9012) ampc_cephalosporin_resistance for I
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2021-01-25 21:58:00 +01:00 |
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24eb4453db
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(v1.5.0.9011) small dosage update
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2021-01-24 23:27:11 +01:00 |
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286eaa9699
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(v1.5.0.9010) MDRO vignette update, get_episode for < day
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2021-01-24 14:48:56 +01:00 |
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1a88caa119
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(v1.5.0.9009) unit test fixes
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2021-01-22 10:55:07 +01:00 |
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1ba44776a1
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(v1.5.0.9008) Internal data sets to pkg, speed for auto col determination
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2021-01-22 10:20:41 +01:00 |
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27f084d819
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(v1.5.0.9007) updated unit tests
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2021-01-18 18:45:43 +01:00 |
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4eab095306
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(v1.5.0.9006) major documentation update
|
2021-01-18 16:57:56 +01:00 |
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e95218c0d1
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(v1.5.0.9005) custom MDRO guideline
|
2021-01-17 10:35:21 +01:00 |
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e699de955c
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(v1.5.0.9004) custom MDRO guideline
|
2021-01-17 00:26:48 +01:00 |
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7ebc534ccd
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(v1.5.0.9003) verbose output of mdro()
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2021-01-15 22:44:52 +01:00 |
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6745f3fb17
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(v1.5.0.9002) doc update
|
2021-01-14 15:51:41 +01:00 |
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bc00470dca
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(v1.5.0.9001) more informative argument errors
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2021-01-14 14:41:44 +01:00 |
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d014955ce0
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(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
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2021-01-12 22:08:04 +01:00 |
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3b84b8be75
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v1.5.0
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2021-01-06 11:16:17 +01:00 |
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1563dcd1aa
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(v1.4.0.9062) unit test fix
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2021-01-04 14:46:17 +01:00 |
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a7ea4c9d2f
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(v1.4.0.9061) ab class selector fix
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2021-01-04 14:16:09 +01:00 |
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8d117820b8
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(v1.4.0.9060) ab class selector fix
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2021-01-04 13:39:06 +01:00 |
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c9de74c81a
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(v1.4.0.9059) ab class selector fix
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2021-01-04 12:29:25 +01:00 |
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82cfa24ea4
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(v1.4.0.9058) GH actions update
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2021-01-04 11:27:37 +01:00 |
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daac96fefe
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(v1.4.0.9057) GH actions update
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2021-01-04 09:49:42 +01:00 |
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63a4dda467
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(v1.4.0.9056) subsetting ab class selectors for base R
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2021-01-03 23:40:05 +01:00 |
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ecac443f86
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(v1.4.0.9055) more unit tests
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2020-12-31 13:44:58 +01:00 |
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10dec96058
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(v1.4.0.9054) unit test update
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2020-12-29 22:06:01 +01:00 |
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d3f007bf65
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(v1.4.0.9053) unit test old R versions
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2020-12-29 21:23:01 +01:00 |
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526f8afb08
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(v1.4.0.9052) replaced all sapply's with type-safe vapply's
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2020-12-28 22:24:33 +01:00 |
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ed198916bf
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(v1.4.0.9048) AmpC de-repressed cephalo-resistant mutants
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2020-12-27 14:23:11 +01:00 |
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8b52f9b1be
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(v1.4.0.9047) unit tests
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2020-12-27 00:30:28 +01:00 |
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df37584189
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(v1.4.0.9044) mo tibble printing, mo_shortname() fix
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2020-12-24 23:29:10 +01:00 |
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81af41da3a
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(v1.4.0.9041) updates based on review
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2020-12-17 16:22:25 +01:00 |
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28e77680c5
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(v1.4.0) matching score update
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2020-10-08 11:16:03 +02:00 |
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4e0374af29
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(v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup
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2020-09-29 23:35:46 +02:00 |
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9667c2994f
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(v1.3.0.9029) eucast rules fix, unique()
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2020-09-25 14:44:50 +02:00 |
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c19095a3d5
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(v1.3.0.9026) eucast expert rules 3.2
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2020-09-24 00:30:11 +02:00 |
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2f0186ace2
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(v1.3.0.9024) optimalisation
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2020-09-19 12:57:51 +02:00 |
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d049cce69b
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(v1.3.0.9023) optimalisation
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2020-09-19 11:54:01 +02:00 |
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4e40e42011
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(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix
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2020-09-18 16:05:53 +02:00 |
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354c606d6a
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(v1.3.0.9019) small fix
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2020-09-14 14:08:07 +02:00 |
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7b6dd676f7
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(v1.3.0.9018) language corrections
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2020-09-14 12:21:23 +02:00 |
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0f6760d427
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(v1.3.0.9017) small fix
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2020-09-12 13:54:21 +02:00 |
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3ff871afeb
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(v1.3.0.9016) mo_uncertainties() overhaul
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2020-09-12 08:49:01 +02:00 |
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68e9cb78e9
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(v1.3.0.9015) as.mo() speedup for valid taxonomic names
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2020-09-03 20:59:21 +02:00 |
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c4b87fe241
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(v1.3.0.9014) as.mo() speed improvement
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2020-09-03 12:31:48 +02:00 |
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18e52f2725
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(v1.3.0.9013) data sets vignette update
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2020-08-29 21:52:51 +02:00 |
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4f72b3bfc4
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(v1.3.0.9012) data sets vignette update
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2020-08-29 21:41:46 +02:00 |
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50b953b141
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(v1.3.0.9011) suggests pkg update
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2020-08-29 12:04:23 +02:00 |
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74a172ef55
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(v1.3.0.9010) S3 extensions without dependencies
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2020-08-28 21:55:47 +02:00 |
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81af0b001c
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(v1.3.0.9009) documentation update
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2020-08-26 16:13:40 +02:00 |
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9b8db57c65
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(v1.3.0.9008) also tibble printing for ab
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2020-08-26 15:34:12 +02:00 |
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5e45fdcf2a
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(v1.3.0.9007) tibble printing
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2020-08-26 11:33:54 +02:00 |
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c8c8bb4e3a
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(v1.3.0.9006) website update
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2020-08-21 11:40:13 +02:00 |
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818d0441e0
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(v1.3.0.9005) website update
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2020-08-17 21:49:58 +02:00 |
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dab017a50f
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(v1.3.0.9004) data sets, as.disk() improvement
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2020-08-16 21:38:42 +02:00 |
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08d62bb5d5
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(v1.3.0.9002) intrinsic_resistant data set
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2020-08-14 13:36:10 +02:00 |
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c8edcb7439
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(v1.3.0) small fixes
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2020-07-30 15:15:52 +02:00 |
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453f7f210b
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(v1.2.0.9038) CLSI 2019 fix
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2020-07-29 10:33:47 +02:00 |
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1b65d76cfb
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(v1.2.0.9037) survey on website
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2020-07-28 18:39:57 +02:00 |
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09fba38ea6
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(v1.2.0.9035) as.mo() speed improvement
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2020-07-22 10:24:23 +02:00 |
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1d66b5c43c
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(v1.2.0.9032) Permanently move to GitHub
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2020-07-09 20:07:39 +02:00 |
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76fc8e1b14
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(v1.2.0.9026) move to github
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2020-07-08 14:48:06 +02:00 |
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344bbd57f4
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(v1.2.0.9014) ab_from_text()
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2020-06-25 17:34:50 +02:00 |
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352508889c
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(v1.2.0.9005) data set fix
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2020-06-09 16:31:44 +02:00 |
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8b692ecfcf
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(v1.2.0.9004) rsi_df() fix for groups
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2020-06-09 16:18:03 +02:00 |
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40221e5244
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(v1.2.0.9003) better terminal colour support
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2020-06-05 13:56:05 +02:00 |
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d9a4b0bcaf
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(v1.1.0.9021) 1st isolates update
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2020-05-28 10:51:56 +02:00 |
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86d44054f0
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(v1.1.0.9020) updated taxonomy
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2020-05-27 16:37:49 +02:00 |
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1b1e243d14
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(v1.1.0.9016) small fix
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2020-05-21 12:28:57 +02:00 |
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19703eb5d3
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(v1.1.0.9012) lose dependencies
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2020-05-19 12:08:49 +02:00 |
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7f3da74b17
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(v1.1.0.9004) lose dependencies
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2020-05-16 13:05:47 +02:00 |
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4be54d608c
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(v1.0.1.9008) RIVM abbreviations for drugs
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2020-04-14 20:38:09 +02:00 |
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7a6f819232
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(v1.0.1.9006) added generic CLSI rules
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2020-04-14 14:12:31 +02:00 |
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d1cb7d3b6f
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(v1.0.1.9005) as.mo() improvements
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2020-04-13 21:09:56 +02:00 |
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219cff403f
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(v1.0.1.9004) Support dplyr 1.0.0
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2020-03-14 14:05:43 +01:00 |
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fa0d9c58d9
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(v1.0.1.9000) first PCA implementation
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2020-03-07 21:48:21 +01:00 |
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47fe8b7820
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(v1.0.0.9004) add example_isolaten_unclean
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2020-02-21 16:05:19 +01:00 |
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c6184a0fb8
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(v0.9.0.9029) add uti to as.rsi()
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2020-02-20 13:19:23 +01:00 |
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5e2b294351
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(v0.9.0.9026) update documentation
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2020-02-17 14:38:01 +01:00 |
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9b8b02960e
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(v0.9.0.9023) EUCAST 2020 guidelines
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2020-02-14 19:54:13 +01:00 |
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5a98e6b777
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(v0.9.0.9022) inheritance fix
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2020-02-10 14:18:15 +01:00 |
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c7a76ba713
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(v0.9.0.9020) as.mo() improvement
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2020-02-09 22:04:29 +01:00 |
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4e1c16c5a5
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(v0.9.0.9019) website update
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2020-02-01 15:09:36 +01:00 |
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a13c62e6e8
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(v0.9.0.9016) Support SNOMED codes
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2020-01-27 19:14:23 +01:00 |
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42b079cdb7
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(v0.9.0.9015) Fix for as.rsi.disk()
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2020-01-27 11:37:00 +01:00 |
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9a3891efe4
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(v0.9.0.9014) Machine reading guidelines
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2020-01-27 11:05:39 +01:00 |
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449d9bde35
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(v0.9.0.9012) Support for LOINC codes
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2020-01-26 20:20:00 +01:00 |
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