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mirror of https://github.com/msberends/AMR.git synced 2024-12-26 18:46:13 +01:00
Commit Graph

200 Commits

Author SHA1 Message Date
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
2dee1d71dc (v2.1.1.9053) add verbose to as.sir(), unit test fix 2024-06-17 10:38:45 +02:00
bdbf5198a2 (v2.1.1.9050) vctrs fix for sir, small documentation fixes 2024-06-15 15:33:49 +02:00
9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N 2024-06-14 22:39:01 +02:00
d214f74e25 allow column name for ab in as.sir() 2024-05-20 21:29:13 +02:00
08a27922a8 new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
0d8a91db49 rename pre-commit hook to pre-commit checks (no-check) 2024-04-23 10:55:48 +02:00
2899b3c840 new mo_group_members() 2024-04-19 10:18:21 +02:00
0039cb05d6 update MIC comparisons 2024-04-05 16:44:43 +02:00
7be4dabbc0 support veterinary MIC/disk translation 2024-02-24 15:16:52 +01:00
6f417d0ef2 add scale_x_mic() 2023-12-03 01:06:00 +01:00
7cda9e575b prepare for CRAN 2023-10-20 14:51:48 +02:00
fd480d1a9a console hyperlink fix 2023-07-14 09:50:13 +02:00
8df1cd8d97 interpretation fixes 2023-07-11 09:50:45 +02:00
a4e2e25e3f reftbl in plots, speedup for as.sir() and mo_validate 2023-07-10 16:43:46 +02:00
70c601ca11 breakpoints UTI interpretation fix 2023-07-10 13:41:52 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
1d9ee39cc7 fix for mo codes 2023-06-22 15:24:18 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
e1966503ee unit testing R4.3 2023-05-26 20:37:00 +02:00
c6135d2082 updated microorganism codes 2023-05-26 16:10:01 +02:00
91fa73dedf add oxygen tolerance 2023-05-11 21:56:27 +02:00
147f9112e9 Fix some WHONET codes 2023-04-14 11:12:26 +02:00
c28cfa3a77 fix documentation 2023-03-16 08:55:37 +01:00
80cfc503c2 check for 2.0 2023-03-12 13:02:37 +01:00
7ad8635994 documentation for 'data.table' AB selectors 2023-03-11 16:54:02 +01:00
262598b8d7 support for old rsi arguments 2023-03-11 14:24:34 +01:00
dad25302f2 make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
8d902410f9 unit tests 2023-02-18 14:56:06 +01:00
8dcf101a9c website 2023-02-18 13:08:08 +01:00
ba255ddb00 website 2023-02-18 11:57:17 +01:00
db2830124f fix for using dplyr::select() 2023-02-15 19:48:34 +01:00
a82552dd88 fix for group selections 2023-02-15 17:37:49 +01:00
6016547f1f support for dplyr 1.1.0 2023-02-15 17:02:10 +01:00
a4cd38c433 fix for R < 3.2, expect_warning() on hold 2023-02-14 10:41:01 +01:00
45a9697c84 unit tests 2023-02-12 17:10:48 +01:00
c740967cf2 fix for binding rows 2023-02-12 11:20:14 +01:00
c51fb24363 pm_bind_rows 2023-02-11 22:28:48 +01:00
b146de6d7f fix for bind_rows2, added 4 langs 2023-02-11 21:57:12 +01:00
2007c3eef3 bind_rows 2023-02-10 17:09:48 +01:00
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
4b133d4c96 unit tests 2023-01-30 17:24:03 +01:00
19fd0ef121 sort sir history 2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
b94bc6c67b adding mo fixes 2023-01-14 19:50:25 +01:00
84ed8c32bb documentation 2023-01-06 19:21:04 +01:00
a0ee86536a unit tests 2023-01-05 14:43:18 +01:00
e4ea96cbf9 fix for R < 3.4 2022-12-30 12:57:27 +01:00