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mirror of https://github.com/msberends/AMR.git synced 2024-12-26 16:06:11 +01:00
Commit Graph

65 Commits

Author SHA1 Message Date
175a6777f3
(v2.1.1.9116) selectors as separate functions 2024-12-13 09:44:54 +01:00
ac1c40d8bb (v2.1.1.9081) HUGE microorganisms update for fungi! 2024-09-29 22:17:56 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
7be4dabbc0 support veterinary MIC/disk translation 2024-02-24 15:16:52 +01:00
83e92fd88c docu fix 2023-12-04 08:19:02 +01:00
4c11a7bd9c v2.1.1 2023-10-22 15:51:27 +02:00
fd480d1a9a console hyperlink fix 2023-07-14 09:50:13 +02:00
9cf054903b version bump 2023-07-12 11:42:29 +01:00
8df1cd8d97 interpretation fixes 2023-07-11 09:50:45 +02:00
dab20c09f6 unit test 2023-07-10 18:30:26 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
Dr. Matthijs Berends
f065945d7b
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
e1966503ee unit testing R4.3 2023-05-26 20:37:00 +02:00
766db4e21f as.mo fix 2023-05-26 19:20:21 +02:00
9148a2dcf4 fix mo_rank() for 'unknown' MOs 2023-04-20 15:20:41 +02:00
147f9112e9 Fix some WHONET codes 2023-04-14 11:12:26 +02:00
c28cfa3a77 fix documentation 2023-03-16 08:55:37 +01:00
dd7cc86485 help page %like% 2023-03-14 19:49:50 +01:00
80cfc503c2 check for 2.0 2023-03-12 13:02:37 +01:00
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
830c67f1bf documentation, unit tests 2023-01-24 10:20:27 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
593d740b84 documentation, file permissions 2023-01-19 12:54:53 +01:00
33f269e2f4 contrib update 2023-01-12 23:16:05 +01:00
5f3a7694aa microorganisms update, added Salmonella groups 2022-12-16 16:10:43 +01:00
8da2467209 updated taxonomy 2022-12-12 00:14:56 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support (#77) 2022-11-13 08:46:10 +01:00
9444ed6d1d fix antibiotics error 2022-10-30 21:05:46 +01:00
d40e0ef20b completely updated antibiotics 2022-10-30 14:31:45 +01:00
c2801ba7a1 new rsi_translation 2022-10-22 22:00:15 +02:00
d0b54f640c Update contributors list 2022-10-21 21:56:54 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
578e7dfee9 (v1.7.1.9070) Better WHONET support 2021-12-13 10:18:28 +01:00
37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00
683a0e748a (v1.7.1.9001) unit tests 2021-06-05 15:12:01 +02:00
bef0f42f66 (v1.7.0.9001) CLSI 2020 guideline 2021-06-01 15:33:06 +02:00
91dd755cac (v1.5.0.9031) math processing of MICs 2021-03-05 15:36:39 +01:00
2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00
4eab095306 (v1.5.0.9006) major documentation update 2021-01-18 16:57:56 +01:00
ee70883246 (v1.4.0.9042) auto dark theme website 2020-12-21 22:46:29 +01:00
81af41da3a (v1.4.0.9041) updates based on review 2020-12-17 16:22:25 +01:00
1faa816090 (v1.4.0.9040) LA-MRSA / CA-MRSA 2020-12-16 16:18:53 +01:00
28e77680c5 (v1.4.0) matching score update 2020-10-08 11:16:03 +02:00
c8c8bb4e3a (v1.3.0.9006) website update 2020-08-21 11:40:13 +02:00
1b65d76cfb (v1.2.0.9037) survey on website 2020-07-28 18:39:57 +02:00
76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
329a0eb0b6 (v1.2.0.9019) ab_from_text() dose and administration 2020-07-01 11:07:01 +02:00
219cff403f (v1.0.1.9004) Support dplyr 1.0.0 2020-03-14 14:05:43 +01:00
5e2b294351 (v0.9.0.9026) update documentation 2020-02-17 14:38:01 +01:00