 dr. M.S. (Matthijs) Berends
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9ddf6dc530
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support A. species for as.mo, cleanup
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2018-11-24 20:25:09 +01:00 |
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dr. M.S. (Matthijs) Berends
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6b0f4ffbd4
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new kingdom
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2018-11-09 13:11:54 +01:00 |
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dr. M.S. (Matthijs) Berends
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d15bb2ab3f
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read_4D
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2018-11-05 15:30:49 +01:00 |
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dr. M.S. (Matthijs) Berends
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d07e9b904e
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new function get_locale
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2018-11-05 13:20:32 +01:00 |
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dr. M.S. (Matthijs) Berends
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d0bc05e5b1
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speed improvement is.rsi.eligible
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2018-11-02 14:55:29 +01:00 |
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dr. M.S. (Matthijs) Berends
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40a159e78d
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more unit tests
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2018-11-02 10:27:57 +01:00 |
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dr. M.S. (Matthijs) Berends
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5476fecc73
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eucast update
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2018-11-01 20:23:33 +01:00 |
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dr. M.S. (Matthijs) Berends
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d3f5236690
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simplify gitlab ci
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2018-10-31 13:42:35 +01:00 |
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dr. M.S. (Matthijs) Berends
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9cd4ab928a
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speed improvement as.mo, freq title
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2018-10-31 12:10:49 +01:00 |
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dr. M.S. (Matthijs) Berends
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160e025609
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try to fix gitlab pipelines
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2018-10-23 19:49:31 +02:00 |
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dr. M.S. (Matthijs) Berends
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87757748bd
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switch to gitlab
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2018-10-23 16:49:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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299c5bea43
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na freq, removed factors
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2018-10-23 09:42:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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c2a93b46db
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breaks param, tidyr dep change, freq markdown
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2018-10-22 12:32:59 +02:00 |
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dr. M.S. (Matthijs) Berends
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5727800b9a
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readme fix
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2018-10-18 21:43:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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0ef91be3ac
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param rules for EUCAST
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2018-10-18 12:10:10 +02:00 |
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dr. M.S. (Matthijs) Berends
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693f64bdbf
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new EUCAST rules: clinical breakpoints
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2018-10-17 17:32:34 +02:00 |
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dr. M.S. (Matthijs) Berends
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95c9fdc552
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CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
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2018-10-09 13:53:33 +02:00 |
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dr. M.S. (Matthijs) Berends
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c7c57f4042
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0.4.0, just published on CRAN
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2018-10-01 19:36:42 +02:00 |
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dr. M.S. (Matthijs) Berends
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6d761436f7
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benchmarks on readme and speed improvement for direct mo codes
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2018-10-01 16:26:02 +02:00 |
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dr. M.S. (Matthijs) Berends
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3119a221e5
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authors from ITIS, diff for freq
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2018-10-01 11:39:43 +02:00 |
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dr. M.S. (Matthijs) Berends
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92c9cc2608
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diff for freq, fix for mo_shortname
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2018-09-29 21:54:32 +02:00 |
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dr. M.S. (Matthijs) Berends
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a6aa9e95fb
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completed old taxonomic names
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2018-09-28 20:13:13 +02:00 |
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dr. M.S. (Matthijs) Berends
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768fe17324
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removed clipboard functions as it violated CRAN policies
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2018-09-28 16:05:18 +02:00 |
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dr. M.S. (Matthijs) Berends
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450992baea
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new: 1680 old taxonomic names
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2018-09-25 16:44:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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9c566585b0
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first inclusion of ITIS data
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2018-09-24 23:33:29 +02:00 |
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dr. M.S. (Matthijs) Berends
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5d80cef338
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added taxonomic data from ITIS
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2018-09-17 20:53:32 +02:00 |
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dr. M.S. (Matthijs) Berends
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db14781593
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add labels_rsi_count
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2018-09-16 22:11:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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b792a2754e
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added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
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2018-09-16 16:43:29 +02:00 |
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dr. M.S. (Matthijs) Berends
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cb0d74a4f0
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support for French and Italian, added quote to freq
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2018-09-10 15:45:25 +02:00 |
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dr. M.S. (Matthijs) Berends
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b83e6a9380
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algoritm improvement, removed all Catabacter except for C. hongkongensis
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2018-09-10 11:40:54 +02:00 |
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dr. M.S. (Matthijs) Berends
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26f5be0033
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support for portuguese, language determination based on system
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2018-09-08 16:06:47 +02:00 |
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dr. M.S. (Matthijs) Berends
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790bd1622d
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added vanA to vanE positive Enterococci
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2018-09-05 09:49:19 +02:00 |
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dr. M.S. (Matthijs) Berends
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b388e3fee7
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Support for German and Spanish microorganism properties, cleanup
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2018-09-04 11:33:30 +02:00 |
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dr. M.S. (Matthijs) Berends
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75fe4d401f
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new MOs, cleanup
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2018-09-01 21:19:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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5965d3c794
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replaced bactid by mo
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2018-08-31 13:36:19 +02:00 |
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dr. M.S. (Matthijs) Berends
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d9e68e0a50
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ggplot_rsi example update, more unit tests
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2018-08-29 16:25:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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029157b3be
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163 new trade names, added ab_tradenames
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2018-08-29 12:27:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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972fc4f6c7
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ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
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2018-08-28 13:51:13 +02:00 |
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dr. M.S. (Matthijs) Berends
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2acdb1981c
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atc and bactid functions, readme update
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2018-08-25 22:01:14 +02:00 |
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dr. M.S. (Matthijs) Berends
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febd0ca885
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geom_rsi - any parameter
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2018-08-23 21:27:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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3e87c8f409
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count_* functions
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2018-08-22 00:02:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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8bad33858e
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readme typo
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2018-08-15 11:12:38 +02:00 |
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dr. M.S. (Matthijs) Berends
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1699d7b8b3
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better example of grouping variable in ggplot_rsi
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2018-08-14 12:07:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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533342583a
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Travis checks
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2018-08-14 11:37:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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7584c929a5
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new AppVeyor environment
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2018-08-14 08:57:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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e5193c7749
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AppVeyor
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2018-08-13 23:05:53 +02:00 |
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dr. M.S. (Matthijs) Berends
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59ce1eb1b1
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ggplot_rsi improvements
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2018-08-13 16:42:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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ce2cdb9309
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support groups for portion_df, update README
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2018-08-12 22:34:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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e5d32cafe0
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new unit tests for ggplot, small fixes
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2018-08-12 17:44:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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1ba7d883fe
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new ggplot enhancement
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2018-08-11 21:30:00 +02:00 |