 dr. M.S. (Matthijs) Berends
|
65c6702b21
|
(v0.7.1.9004) atc class removal
|
2019-06-27 11:57:45 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
409397a337
|
(v0.7.0.9012) unit test
|
2019-06-18 19:28:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
9c39c35f86
|
(v0.7.0.9010) mo_synonyms, plot/barplot fixes
|
2019-06-16 21:42:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
254745061c
|
(v0.7.0.9008) T. vaginalis, rsi_df
|
2019-06-13 14:28:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
8f674e19bb
|
(v0.7.0.9005) ab algorithm update
|
2019-06-11 14:18:25 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ec48f1d83b
|
(v0.7.0.9003) scale fix
|
2019-06-08 23:50:06 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
f50d3a5ba1
|
(v0.7.0.9002) scale fix
|
2019-06-08 15:00:28 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
f02679fb63
|
(v0.7.0.9001) new pathovars, small fixes
|
2019-06-07 22:47:37 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2667fff8a7
|
(v0.6.1.9050) support staged install
|
2019-06-01 20:40:49 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
8b5e2b030b
|
added boxplot for (grouped) freq()
|
2019-05-29 19:56:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
60983a1640
|
added mdr_tb()
|
2019-05-23 16:58:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5eda991c47
|
ab_info fix
|
2019-05-16 22:07:31 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
0dc0715dc6
|
CI tests
|
2019-05-13 12:21:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
68cc7ef0d0
|
new antibiotics
|
2019-05-10 16:44:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
cffb7787d8
|
cfta streptococci
|
2019-04-09 10:34:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
fbc9191b13
|
new EUCAST rules algorithm
|
2019-04-05 18:47:39 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
29f444543d
|
added Becker 2019
|
2019-03-26 14:24:03 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c6a12266e7
|
DSMZ data
|
2019-03-18 14:29:41 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
fdffc2791b
|
memory for as.mo()
|
2019-03-15 13:57:25 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
74e0ae21fd
|
con WHONET, filter ab class
|
2019-03-05 22:47:42 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2565b60024
|
rlang dependency, new fungi
|
2019-02-28 13:56:28 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
642f6571fe
|
as.mo fix
|
2019-02-27 14:22:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
41ad7a22c8
|
mo_rank mo_url, added Tremellales
|
2019-02-22 22:12:10 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
fb1fc3686c
|
Catalogue of life
|
2019-02-20 00:04:48 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
54f8258f8c
|
Catalogue of Life, replaces ITIS
|
2019-02-18 02:33:37 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
76ed26d27e
|
resistance predict update
|
2019-02-11 10:27:10 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
1a1e81c5d2
|
as.rsi warning, site update
|
2019-02-10 09:13:06 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
cbad93d92b
|
wget dependency
|
2019-02-10 08:49:57 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
ed30312048
|
mo codes for WHONET
|
2019-02-08 16:06:54 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
587e00b7be
|
is.rsi.eligible update
|
2019-02-04 12:24:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
3efb54d016
|
freq update
|
2019-01-29 20:20:09 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f6336fdd89
|
quasiquotation for freq()
|
2019-01-28 11:20:32 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
63e343d555
|
deps fix
|
2019-01-27 20:49:11 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
18b75356a9
|
re-add atc_ddd and atc_groups
|
2019-01-27 13:33:43 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f836722269
|
atc_ functions
|
2019-01-26 23:22:56 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
46dcc7e2e8
|
set_mo_source
|
2019-01-21 15:53:01 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c6c3088e9f
|
select() fix for freq
|
2019-01-17 12:08:04 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
8db87a15e9
|
fixes
|
2019-01-15 16:38:54 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
046d195064
|
resistance predict
|
2019-01-15 12:45:24 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
641d866db2
|
guess_ab_col, benchmarks
|
2019-01-11 20:37:23 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
80ea555663
|
guess_ab
|
2019-01-03 23:56:19 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
92a32b62a7
|
new website, freq updates
|
2018-12-29 22:24:19 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
0b8084871d
|
dplyr 0.8.0 support, fixes #7
|
2018-12-22 22:39:34 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2018d5b477
|
age and age_groups
|
2018-12-15 22:40:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
8e8a9cd190
|
AI improvements
|
2018-12-07 12:04:55 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
60fe98bbbd
|
better as.mo handling
|
2018-12-06 14:36:39 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
4fcc2b409a
|
MDRO update
|
2018-11-16 20:50:50 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
fab64e6728
|
read.4D improvements
|
2018-11-15 12:42:35 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6b0f4ffbd4
|
new kingdom
|
2018-11-09 13:11:54 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
9be5e0318b
|
freq: fix na.rm in groups
|
2018-11-08 16:10:03 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
84e08f516a
|
grouping var for freq
|
2018-11-06 16:41:59 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d15bb2ab3f
|
read_4D
|
2018-11-05 15:30:49 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d07e9b904e
|
new function get_locale
|
2018-11-05 13:20:32 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
5476fecc73
|
eucast update
|
2018-11-01 20:23:33 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
86b03577a7
|
fix for as.mo, added also_single_tested
|
2018-10-19 13:53:31 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
0ef91be3ac
|
param rules for EUCAST
|
2018-10-18 12:10:10 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
693f64bdbf
|
new EUCAST rules: clinical breakpoints
|
2018-10-17 17:32:34 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5b5b95a47b
|
count_all and some fixes
|
2018-10-12 16:35:18 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
95c9fdc552
|
CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
|
2018-10-09 13:53:33 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ed17db0263
|
renamed year columns to ref
|
2018-10-01 14:44:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3119a221e5
|
authors from ITIS, diff for freq
|
2018-10-01 11:39:43 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
92c9cc2608
|
diff for freq, fix for mo_shortname
|
2018-09-29 21:54:32 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
768fe17324
|
removed clipboard functions as it violated CRAN policies
|
2018-09-28 16:05:18 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
9c566585b0
|
first inclusion of ITIS data
|
2018-09-24 23:33:29 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5d80cef338
|
added taxonomic data from ITIS
|
2018-09-17 20:53:32 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
db14781593
|
add labels_rsi_count
|
2018-09-16 22:11:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b792a2754e
|
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
|
2018-09-16 16:43:29 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e39a9a8b05
|
added mo_shortname
|
2018-09-05 10:51:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b388e3fee7
|
Support for German and Spanish microorganism properties, cleanup
|
2018-09-04 11:33:30 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5965d3c794
|
replaced bactid by mo
|
2018-08-31 13:36:19 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
029157b3be
|
163 new trade names, added ab_tradenames
|
2018-08-29 12:27:37 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
972fc4f6c7
|
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
|
2018-08-28 13:51:13 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2acdb1981c
|
atc and bactid functions, readme update
|
2018-08-25 22:01:14 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a100d07da6
|
removed ratio, better rsi_calc, update for freq
|
2018-08-24 11:08:20 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
da5379c881
|
quasiquotation, alpha for geom_rsi
|
2018-08-23 00:40:36 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3e87c8f409
|
count_* functions
|
2018-08-22 00:02:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ce2cdb9309
|
support groups for portion_df, update README
|
2018-08-12 22:34:03 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
1ba7d883fe
|
new ggplot enhancement
|
2018-08-11 21:30:00 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
53fa198e35
|
new portion functions
|
2018-08-10 15:01:05 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ae2433a020
|
rsi family for resistance analysis
|
2018-08-03 14:49:29 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
826694323b
|
new functions R, RI, SI, S
|
2018-07-29 22:14:51 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
feab1cad6b
|
small fixes
|
2018-07-28 09:34:03 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
498e88b5cf
|
improvement for forecasting resistance
|
2018-07-26 16:30:42 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d9e204031d
|
update to septic_patients, speed improvements
|
2018-07-25 14:17:04 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
8421638b60
|
new class bactid
|
2018-07-23 14:14:03 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5cb9c541f8
|
new algorithm key abs
|
2018-07-17 13:02:05 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a5a4354651
|
speed improvements
|
2018-07-17 10:32:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
715a7630ca
|
support format.freq
|
2018-07-16 16:41:48 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b6655f6454
|
Welcome C++!
|
2018-07-13 17:23:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a28289562a
|
remove print function, out of scope
|
2018-07-11 20:12:19 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
f63414d519
|
new g.test, extra unit tests
|
2018-07-10 12:27:07 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
fc30d3fb13
|
freq: support for table
|
2018-07-09 14:02:58 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
14b990d769
|
kurtosis, skewness, start with ML
|
2018-07-08 22:14:55 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
34ee0247ac
|
addins and small improvements to microorganisms dataset
|
2018-07-04 17:20:03 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
10fce8382c
|
include IQR and MAD in freq
|
2018-07-03 11:30:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3d0d21f322
|
rename vector2ratio to ratio
|
2018-07-02 11:14:20 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2c8d4cb8bf
|
forgot namespace...
|
2018-07-01 22:37:47 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3527894b49
|
new g.test() and edited freq()
|
2018-07-01 21:40:37 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
649a8025aa
|
add clipboard functions again
|
2018-06-27 15:54:56 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a9bd5472d0
|
top_freq
|
2018-06-20 14:47:37 +02:00 |