dr. M.S. (Matthijs) Berends
4547a87a88
(v3.1.0.9022) Document grouped first isolates ( #345 )
2026-11-14 22:39:38 +01:00
dr. M.S. (Matthijs) Berends
9898b5df4b
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
Matthijs Berends
3f9f931777
(v3.0.1.9059) Update taxonomy of microorganisms
2026-06-23 01:38:13 +02:00
dr. M.S. (Matthijs) Berends
10ba36821e
(v3.0.0.9034) fix MycoBank synonyms
2025-09-18 13:58:34 +01:00
dr. M.S. (Matthijs) Berends
1fdab84103
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
dr. M.S. (Matthijs) Berends
63099cd81e
(v2.1.1.9232) is.mic() iteration, documentation cleanup
2025-03-31 10:51:31 +02:00
dr. M.S. (Matthijs) Berends
8ba2e4ed94
(v2.1.1.9141) new AMR selectors, eucast overwrite arg
2025-02-07 18:01:22 +01:00
dr. M.S. (Matthijs) Berends
66833b4f5a
(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper
2025-01-26 23:01:17 +01:00
dr. M.S. (Matthijs) Berends
dad25302f2
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
dr. M.S. (Matthijs) Berends
70a7ba0206
fix first isolate
2023-02-10 13:13:17 +01:00
dr. M.S. (Matthijs) Berends
1a0dc4bf46
revert back to pre-antibiogram
2023-02-09 13:07:39 +01:00
dr. M.S. (Matthijs) Berends
9e99e66f01
use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
dr. M.S. (Matthijs) Berends
830c67f1bf
documentation, unit tests
2023-01-24 10:20:27 +01:00
dr. M.S. (Matthijs) Berends
19fd0ef121
sort sir history
2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR
2023-01-21 23:47:20 +01:00
dr. M.S. (Matthijs) Berends
7ca44fb756
cleanup and new intro logo
2022-11-13 13:44:25 +01:00
dr. M.S. (Matthijs) Berends
aa2c0639d0
add confidence intervals ( fixed #70 ), remove combine_IR
2022-10-20 16:08:01 +02:00
dr. M.S. (Matthijs) Berends
85e2fbe4a3
remove warnings from unit tests
2022-10-19 11:47:57 +02:00
dr. M.S. (Matthijs) Berends
4fe90092c7
fix for NA in as.ab()
2022-10-10 15:44:59 +02:00
dr. M.S. (Matthijs) Berends
4d050aef7c
styled, unit test fix
2022-08-28 10:31:50 +02:00
dr. M.S. (Matthijs) Berends
303d61b473
new tibble export
2022-08-27 20:49:37 +02:00
dr. M.S. (Matthijs) Berends
952d16de33
new, automated website
2022-08-21 16:37:20 +02:00
dr. M.S. (Matthijs) Berends
08d387b5ce
(v1.8.0.9005) as.rsi() fix
2022-03-10 19:33:25 +01:00
dr. M.S. (Matthijs) Berends
18e8525d10
(v1.8.0.9001) as.mo improvement, fixes #52
2022-02-26 21:58:23 +01:00
dr. M.S. (Matthijs) Berends
76dee66852
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
2021-12-14 22:39:23 +01:00
dr. M.S. (Matthijs) Berends
7965468ccd
(v1.7.1.9058) vars selection for set_ab_names()
2021-12-05 22:06:45 +01:00
dr. M.S. (Matthijs) Berends
1daa117e9f
(v1.7.1.9033) dplyr grouping fix on windows?
2021-08-30 15:01:32 +02:00
dr. M.S. (Matthijs) Berends
e6ce25162e
(v1.7.1.9031) dplyr grouping fix on windows?
2021-08-30 14:07:46 +02:00
dr. M.S. (Matthijs) Berends
d04e83f494
(v1.7.1.9005) ab class selectors for R-3.0 and R-3.1
2021-06-22 12:16:42 +02:00
dr. M.S. (Matthijs) Berends
bef0f42f66
(v1.7.0.9001) CLSI 2020 guideline
2021-06-01 15:33:06 +02:00
dr. M.S. (Matthijs) Berends
be49131ed7
(v1.6.0.9043) translation update
2021-05-17 19:43:01 +02:00
dr. M.S. (Matthijs) Berends
29dbfa2f49
(v1.6.0.9021) join functions update
2021-05-12 18:15:03 +02:00
dr. M.S. (Matthijs) Berends
a9fd4aa49f
(v1.6.0.9013) website update
2021-04-29 17:16:30 +02:00
dr. M.S. (Matthijs) Berends
93683a4ae2
(v1.6.0.9010) big first_isolate() update
2021-04-26 23:57:37 +02:00
dr. M.S. (Matthijs) Berends
5f9e7bd3ee
(v1.6.0.9009) key_antibiotics update
2021-04-23 16:13:26 +02:00
dr. M.S. (Matthijs) Berends
c6289c3fc3
(v1.6.0.9007) documentation custom eucast rules, progress bar as.mo
2021-04-20 10:46:17 +02:00
dr. M.S. (Matthijs) Berends
6ff5448192
(v1.6.0.9001) support Inf for episodes
2021-04-12 12:35:13 +02:00
dr. M.S. (Matthijs) Berends
a7c9b4c295
(v1.5.0.9039) handle first isolates for missing antibiograms
2021-03-08 02:38:32 +01:00
dr. M.S. (Matthijs) Berends
4a84894f79
(v1.5.0.9016) only_rsi_columns update, documentation
2021-02-08 14:18:42 +01:00
dr. M.S. (Matthijs) Berends
8fda473e49
(v1.5.0.9015) unit test fix, grouped first isolates
2021-02-04 16:48:16 +01:00
dr. M.S. (Matthijs) Berends
2eca8c3f01
(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
2021-02-02 23:57:35 +01:00
dr. M.S. (Matthijs) Berends
286eaa9699
(v1.5.0.9010) MDRO vignette update, get_episode for < day
2021-01-24 14:48:56 +01:00
dr. M.S. (Matthijs) Berends
4eab095306
(v1.5.0.9006) major documentation update
2021-01-18 16:57:56 +01:00
dr. M.S. (Matthijs) Berends
d014955ce0
(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
2021-01-12 22:08:04 +01:00
dr. M.S. (Matthijs) Berends
afc325c314
(v1.4.0.9050) ab selectors base R
2020-12-27 20:32:40 +01:00
dr. M.S. (Matthijs) Berends
128ebcfd62
(v1.4.0.9043) documentation update
2020-12-22 00:51:17 +01:00
dr. M.S. (Matthijs) Berends
81af41da3a
(v1.4.0.9041) updates based on review
2020-12-17 16:22:25 +01:00
dr. M.S. (Matthijs) Berends
2145f1d1ba
(v1.4.0.9033) documentation update
2020-12-08 12:37:25 +01:00
dr. M.S. (Matthijs) Berends
1bdb136b3a
(v1.4.0.9032) auto-data guessing for functions
2020-12-07 16:06:42 +01:00
dr. M.S. (Matthijs) Berends
4c114ff4b4
(v1.4.0.9029) grey background for backticks, like readr pkg
2020-12-01 16:59:57 +01:00
