36 Commits

Author	SHA1	Message	Date
dr. M.S. (Matthijs) Berends	b84d647cac	(v1.8.1.9012) update prevalence of some genera	2022-06-03 13:28:55 +02:00
dr. M.S. (Matthijs) Berends	1b84564d36	(v1.8.1.9011) update prevalence of some genera	2022-06-03 12:43:25 +02:00
dr. M.S. (Matthijs) Berends	6de5375256	(v1.8.1.9007) website update	2022-05-11 10:10:31 +02:00
dr. M.S. (Matthijs) Berends	641b88c814	website update	2022-03-27 09:37:55 +02:00
dr. M.S. (Matthijs) Berends	0fb9a1b194	prerelease 1.8.1	2022-03-14 16:43:15 +01:00
dr. M.S. (Matthijs) Berends	45e9546538	prerelease 1.8.1 ... Merge branch 'development' of https://github.com/msberends/AMR into development # Conflicts: # docs/articles/AMR.html # docs/articles/AMR_files/figure-html/disk_plots-1.png # docs/articles/AMR_files/figure-html/disk_plots_mo_ab-1.png # docs/articles/AMR_files/figure-html/mic_plots-1.png # docs/articles/AMR_files/figure-html/mic_plots-2.png # docs/articles/AMR_files/figure-html/mic_plots_mo_ab-1.png # docs/articles/AMR_files/figure-html/mic_plots_mo_ab-2.png # docs/articles/AMR_files/figure-html/plot 1-1.png # docs/articles/AMR_files/figure-html/plot 3-1.png # docs/articles/AMR_files/figure-html/plot 4-1.png # docs/articles/AMR_files/figure-html/plot 5-1.png # docs/articles/EUCAST.html # docs/articles/MDR.html # docs/articles/PCA.html # docs/articles/PCA_files/figure-html/unnamed-chunk-6-1.png # docs/articles/PCA_files/figure-html/unnamed-chunk-7-1.png # docs/articles/SPSS.html # docs/articles/WHONET.html # docs/articles/WHONET_files/figure-html/unnamed-chunk-7-1.png # docs/articles/benchmarks.html # docs/articles/benchmarks_files/figure-html/unnamed-chunk-4-1.png # docs/articles/datasets.html # docs/articles/resistance_predict.html # docs/articles/resistance_predict_files/figure-html/unnamed-chunk-4-1.png # docs/articles/resistance_predict_files/figure-html/unnamed-chunk-5-1.png # docs/articles/resistance_predict_files/figure-html/unnamed-chunk-5-2.png # docs/articles/resistance_predict_files/figure-html/unnamed-chunk-6-1.png # docs/articles/resistance_predict_files/figure-html/unnamed-chunk-7-1.png # docs/articles/welcome_to_AMR.html # docs/news/index.html # docs/pkgdown.yml # docs/reference/AMR-deprecated.html # docs/reference/AMR.html # docs/reference/WHOCC.html # docs/reference/WHONET.html # docs/reference/antibiotics.html # docs/reference/catalogue_of_life.html # docs/reference/catalogue_of_life_version.html # docs/reference/dosage.html # docs/reference/example_isolates.html # docs/reference/example_isolates_unclean.html # docs/reference/g.test.html # docs/reference/intrinsic_resistant.html # docs/reference/microorganisms.codes.html # docs/reference/microorganisms.html # docs/reference/microorganisms.old.html # docs/reference/rsi_translation.html	2022-03-14 16:37:37 +01:00
dr. M.S. (Matthijs) Berends	1b0983e382	(v1.8.1) prerelease 1.8.1	2022-03-14 16:36:10 +01:00
dr. M.S. (Matthijs) Berends	8c9feea087	website update	2022-03-12 19:53:29 +01:00
dr. M.S. (Matthijs) Berends	08d387b5ce	(v1.8.0.9005) as.rsi() fix	2022-03-10 19:33:25 +01:00
dr. M.S. (Matthijs) Berends	ad82bb4ce0	(v1.8.0.9004) MIC printing in tibbles	2022-03-03 21:11:02 +01:00
dr. M.S. (Matthijs) Berends	18e8525d10	(v1.8.0.9001) as.mo improvement, fixes #52	2022-02-26 21:58:23 +01:00
dr. M.S. (Matthijs) Berends	25cef46c59	(v1.8.0) prerelease 1.8.0	2021-12-23 18:56:28 +01:00
dr. M.S. (Matthijs) Berends	578e7dfee9	(v1.7.1.9070) Better WHONET support	2021-12-13 10:18:28 +01:00
dr. M.S. (Matthijs) Berends	1e66a3daf3	(v1.7.1.9068) new logo, unit tests	2021-12-12 11:07:02 +01:00
dr. M.S. (Matthijs) Berends	e63defe324	(v1.7.1.9062) website update	2021-12-06 11:12:30 +01:00
dr. M.S. (Matthijs) Berends	7965468ccd	(v1.7.1.9058) vars selection for set_ab_names()	2021-12-05 22:06:45 +01:00
dr. M.S. (Matthijs) Berends	694cf5ba77	(v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup	2021-11-28 23:01:26 +01:00
dr. M.S. (Matthijs) Berends	37e6e35ec4	(v1.7.1.9051) updated taxonomy, updated git branch name	2021-10-06 13:23:57 +02:00
dr. M.S. (Matthijs) Berends	93a4734b44	(v1.7.1.9040) Support for Danish	2021-09-29 12:12:35 +02:00
dr. M.S. (Matthijs) Berends	d6a916d70b	(v1.7.1.9030) unit test	2021-08-29 23:50:45 +02:00
dr. M.S. (Matthijs) Berends	a44283f998	(v1.7.1.9024) unit tests	2021-08-17 14:34:11 +02:00
dr. M.S. (Matthijs) Berends	a2d249962f	(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47	2021-08-16 21:54:34 +02:00
dr. M.S. (Matthijs) Berends	4e1efd902c	(v1.7.1.9022) rely on vctrs for ab selectors	2021-07-23 21:42:11 +02:00
dr. M.S. (Matthijs) Berends	3e26929838	(v1.7.1.9009) fix for ab class selectors	2021-07-03 21:56:53 +02:00
dr. M.S. (Matthijs) Berends	95050ee3e0	(v1.7.1.9007) Updated antibiotics dataset, fixes #41	2021-06-23 10:03:17 +02:00
dr. M.S. (Matthijs) Berends	683a0e748a	(v1.7.1.9001) unit tests	2021-06-05 15:12:01 +02:00
dr. M.S. (Matthijs) Berends	1908e7cc7a	(v1.7.1.9000) ab_class update, unit tests	2021-06-04 21:07:55 +02:00
dr. M.S. (Matthijs) Berends	7e70403efb	(v1.7.1) New CRAN release	2021-06-03 15:19:21 +02:00
dr. M.S. (Matthijs) Berends	bef0f42f66	(v1.7.0.9001) CLSI 2020 guideline	2021-06-01 15:33:06 +02:00
dr. M.S. (Matthijs) Berends	ac73a8d849	v1.7.0	2021-05-24 15:29:17 +02:00
dr. M.S. (Matthijs) Berends	5679ccdaf9	(v1.6.0.9017) extra system codes	2021-05-04 12:47:33 +02:00
dr. M.S. (Matthijs) Berends	12a8d59869	(v1.6.0.9015) italicise_taxonomy	2021-05-03 10:47:32 +02:00
dr. M.S. (Matthijs) Berends	93683a4ae2	(v1.6.0.9010) big first_isolate() update	2021-04-26 23:57:37 +02:00
dr. M.S. (Matthijs) Berends	c6289c3fc3	(v1.6.0.9007) documentation custom eucast rules, progress bar as.mo	2021-04-20 10:46:17 +02:00
dr. M.S. (Matthijs) Berends	6ff5448192	(v1.6.0.9001) support Inf for episodes	2021-04-12 12:35:13 +02:00
dr. M.S. (Matthijs) Berends	7a3139f7cc	(v1.6.0.9000) custom EUCAST rules	2021-04-07 08:37:42 +02:00