 dr. M.S. (Matthijs) Berends
|
bdbf5198a2
|
(v2.1.1.9050) vctrs fix for `sir`, small documentation fixes
|
2024-06-15 15:33:49 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
9bf7584d58
|
(v2.1.1.9049) new 2024 breakpoints, add `AMO`, set NI instead of N
|
2024-06-14 22:39:01 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
de17de1be9
|
(v2.1.1.9048) vctrs update for sir
|
2024-06-13 20:55:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c753afcd76
|
(v2.1.1.9045) fix host in animal guidelines
|
2024-06-12 10:32:43 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
31207952d3
|
(v2.1.1.9043) fix sir translation with as.double
|
2024-06-10 10:34:45 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a3071cf58b
|
(v2.1.1.9042) update translations and example isolates
|
2024-06-09 11:31:04 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c5981cdeb3
|
fix unit test
|
2024-06-04 20:17:54 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7c1b564648
|
fix SIR interpretation for uti
|
2024-05-31 21:24:35 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
60c6c21e45
|
fix SIR interpretation
|
2024-05-31 09:50:54 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ba4dc20cf3
|
autoplot fix
|
2024-05-30 16:39:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d4490c7f25
|
fix sorting of MICs, MIC autoplot titles
|
2024-05-30 15:50:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c3ce1b551d
|
rename `limit_mic_range()` to `rescale_mic()`
|
2024-05-24 15:07:41 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d214f74e25
|
allow column name for `ab` in `as.sir()`
|
2024-05-20 21:29:13 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
fc269e667d
|
unit test fix
|
2024-05-20 18:58:35 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
08a27922a8
|
new SDD and N for `as.sir()`
|
2024-05-20 15:27:04 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
94e9a4d99b
|
update MIC implementation
|
2024-04-07 20:22:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
0039cb05d6
|
update MIC comparisons
|
2024-04-05 16:44:43 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b303662ec6
|
fix veterinary for R<4
|
2024-02-24 19:26:35 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
7be4dabbc0
|
support veterinary MIC/disk translation
|
2024-02-24 15:16:52 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c7461766ce
|
Remove RSI from package, add extra MIC scale functions
|
2023-12-03 11:34:48 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
7cd9ca274c
|
add strep groups to ABCG
|
2023-07-12 11:41:25 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
66eeeb4b88
|
cleanup
|
2023-07-11 14:29:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
8df1cd8d97
|
interpretation fixes
|
2023-07-11 09:50:45 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
1b499bf012
|
fixes
|
2023-07-10 17:02:28 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a4e2e25e3f
|
reftbl in plots, speedup for as.sir() and mo_validate
|
2023-07-10 16:43:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
70c601ca11
|
breakpoints UTI interpretation fix
|
2023-07-10 13:41:52 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
acb534102b
|
new species groups, updated clinical breakpoints
|
2023-07-08 17:30:05 +02:00 |
Dr. Matthijs Berends
|
f065945d7b
|
Update clinical breakpoints and fix some `as.mo()` bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
|
2023-06-22 15:10:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
9591688811
|
documentation update
|
2023-05-27 10:39:22 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
0bcf55d3b6
|
improve `as.mo()`
|
2023-05-24 15:55:53 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
80cfc503c2
|
check for 2.0
|
2023-03-12 13:02:37 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
262598b8d7
|
support for old rsi arguments
|
2023-03-11 14:24:34 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c2cfc5ef84
|
fix for `antibiogram()`, transform `WHONET` data set to `sir`
|
2023-02-22 15:40:05 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
dad25302f2
|
make `rsi` work in more cases, documentation update
|
2023-02-22 14:38:57 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
8d902410f9
|
unit tests
|
2023-02-18 14:56:06 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
45a9697c84
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
68abb00c59
|
add include_screening to `as.sir()`
|
2023-02-12 15:09:54 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c740967cf2
|
fix for binding rows
|
2023-02-12 11:20:14 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c51fb24363
|
pm_bind_rows
|
2023-02-11 22:28:48 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2007c3eef3
|
bind_rows
|
2023-02-10 17:09:48 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
bc434db835
|
bring back `antibiogram()`, without deps
|
2023-02-10 16:18:00 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
1a0dc4bf46
|
revert back to pre-antibiogram
|
2023-02-09 13:07:39 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
9e99e66f01
|
use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi
|
2023-02-06 11:57:22 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
830c67f1bf
|
documentation, unit tests
|
2023-01-24 10:20:27 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
eef00069fd
|
add all options to documentation
|
2023-01-23 20:07:57 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
19fd0ef121
|
sort sir history
|
2023-01-23 15:01:21 +01:00 |
|
Dr. Matthijs Berends
|
98e62c9af2
|
Replace RSI with SIR
|
2023-01-21 23:47:20 +01:00 |