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Commit Graph

147 Commits

Author SHA1 Message Date
833a1be36d (v1.4.0.9000) more extensive unit tests 2020-10-15 09:46:41 +02:00
28e77680c5 (v1.4.0) matching score update 2020-10-08 11:16:03 +02:00
baf510183c (v1.3.0.9038) prefinal 1.4.0 2020-10-04 19:26:43 +02:00
4e0374af29 (v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup 2020-09-29 23:35:46 +02:00
c19095a3d5 (v1.3.0.9026) eucast expert rules 3.2 2020-09-24 00:30:11 +02:00
4e40e42011 (v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix 2020-09-18 16:05:53 +02:00
68e9cb78e9 (v1.3.0.9015) as.mo() speedup for valid taxonomic names 2020-09-03 20:59:21 +02:00
c8c8bb4e3a (v1.3.0.9006) website update 2020-08-21 11:40:13 +02:00
08d62bb5d5 (v1.3.0.9002) intrinsic_resistant data set 2020-08-14 13:36:10 +02:00
7d16bec21f (v1.3.0.9001) website update 2020-08-10 12:46:03 +02:00
8ff46eefe9 (v1.3.0) small MIC fix 2020-07-30 12:37:01 +02:00
453f7f210b (v1.2.0.9038) CLSI 2019 fix 2020-07-29 10:33:47 +02:00
1b65d76cfb (v1.2.0.9037) survey on website 2020-07-28 18:39:57 +02:00
1d66b5c43c (v1.2.0.9032) Permanently move to GitHub 2020-07-09 20:07:39 +02:00
7baa9d3658 (v1.2.0.9030) GitHub Actions 2020-07-09 14:12:11 +02:00
76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
b44e2c9202 v1.2.0 2020-05-28 16:48:55 +02:00
ae1969b941 (v1.1.0.9019) mo_source fix 2020-05-25 01:01:14 +02:00
e467cc103e (v1.1.0.9017) as.ab() update, added ab_url() 2020-05-22 20:15:19 +02:00
743f9a5364 (v1.1.0.9015) new default eucast_rules 2020-05-20 12:00:17 +02:00
bf0402a653 (v1.1.0.9009) lose dependencies 2020-05-18 10:30:53 +02:00
7f3da74b17 (v1.1.0.9004) lose dependencies 2020-05-16 13:05:47 +02:00
b040185269 (v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI 2020-04-29 14:33:44 +02:00
e0f4c93e82 v1.1.0 2020-04-17 19:16:30 +02:00
c2ffbd9f95 (v1.0.1.9009) prepare for next release 2020-04-15 11:30:28 +02:00
d1cb7d3b6f (v1.0.1.9005) as.mo() improvements 2020-04-13 21:09:56 +02:00
f444c24ed3 (v1.0.1) v 1.0.1 2020-02-23 20:56:11 +01:00
0d5e78b2cf (v1.0.0.9007) small doc fix 2020-02-22 17:03:47 +01:00
ea32e9916a (v1.0.0.9005) info printing only in interactive mode 2020-02-21 21:13:38 +01:00
c6184a0fb8 (v0.9.0.9029) add uti to as.rsi() 2020-02-20 13:19:23 +01:00
5e2b294351 (v0.9.0.9026) update documentation 2020-02-17 14:38:01 +01:00
423d1d3c41 (v0.9.0.9013) Support for LOINC codes 2020-01-26 20:38:54 +01:00
bb2ed55842 (v0.9.0) v0.9.0 2019-11-29 19:43:23 +01:00
9feef53bde (v0.8.0.9037) complete documentation rewrite 2019-11-28 23:00:37 +01:00
c5f00f4a9f (v0.8.0.9036) complete documentation rewrite 2019-11-28 22:32:17 +01:00
267320f15f (v0.8.0.9033) antivirals data set, cleanup 2019-11-18 12:10:47 +01:00
d22834c5b8 (v0.8.0.9029) cleanup 2019-11-10 15:50:18 +01:00
54b6322056 (v0.8.0.9028) examples fix 2019-11-10 13:17:20 +01:00
59ededa8dc (v0.8.0.9027) adding susceptibility() and resistance() 2019-11-10 12:16:56 +01:00
ef640add2d (v0.8.0.9021) update vignettes 2019-11-09 11:33:22 +01:00
e2d05cb1b0 (v0.8.0.9017) keywords update 2019-11-06 14:43:23 +01:00
2c0f3534bf (v0.7.1.9106) v0.8.0 2019-10-13 09:31:58 +02:00
2eb4a42f3d (v0.7.1.9104) vignette fix 2019-10-12 09:15:27 +02:00
00cdb498a0 (v0.7.1.9102) lintr 2019-10-11 17:21:02 +02:00
34a82d091e (v0.7.1.9067) honor info 2019-08-28 17:12:48 +02:00
248638ad91 (v0.7.1.9065) bug-drug fix 2019-08-27 22:41:09 +02:00
93be16484b (v0.7.1.9063) septic_patients -> example_isolates 2019-08-27 16:45:42 +02:00
04d49a62af (v0.7.1.9057) get_column_abx() improvement 2019-08-15 17:09:27 +02:00
920212e815 (v0.7.1.9056) mo and ab subsetting 2019-08-14 14:57:06 +02:00
7108454ba5 (v0.7.1.9055) algorithm improvements 2019-08-13 16:15:08 +02:00
6a349bf757 (v0.7.1.9032) eucast_rules() improvements 2019-08-09 14:28:46 +02:00
1ce4b72dd2 (v0.7.1.9031) include_unknown for first_isolate() 2019-08-08 22:39:42 +02:00
22a206ffd8 (v0.7.1.9030) eucast_rules() fix 2019-08-08 15:52:07 +02:00
240f03a672 (v0.7.1.9015) Remove freq() 2019-07-29 13:33:48 +02:00
68230d0712 (v0.7.1.90012) mo_shortname fix 2019-07-10 21:36:51 +02:00
156d550895 (v0.7.1.9005) new rsi calculations, atc class removal 2019-07-01 14:03:15 +02:00
6013fbefae (v0.7.1.9003) website update 2019-06-23 21:35:17 +02:00
c9156c004a (v0.7.0.9013) mo_synonym fix 2019-06-22 14:49:12 +02:00
9c39c35f86 (v0.7.0.9010) mo_synonyms, plot/barplot fixes 2019-06-16 21:42:40 +02:00
f02679fb63 (v0.7.0.9001) new pathovars, small fixes 2019-06-07 22:47:37 +02:00
270aa0dd33 v0.7.0 2019-06-03 17:45:22 +02:00
702da574c0 website update 2019-06-02 19:50:22 +02:00
8de0495008 (v0.6.1.9052) website update 2019-06-01 21:28:18 +02:00
2667fff8a7 (v0.6.1.9050) support staged install 2019-06-01 20:40:49 +02:00
493ae2ba0c (v0.6.1.9044) first_isolate fix for species 2019-05-31 14:25:11 +02:00
62e6f41961 website update 2019-05-29 00:36:48 +02:00
27380fa021 fixes for microorganisms.codes 2019-05-28 16:50:40 +02:00
6eb08a2ea3 new git flow to repository 2019-05-20 14:16:53 +02:00
cc403169c6 first isolate missing dates fix 2019-05-13 14:56:23 +02:00
68cc7ef0d0 new antibiotics 2019-05-10 16:44:59 +02:00
461eec9bac cfta streptococci, codecov.yml 2019-04-09 14:59:17 +02:00
429814c29b v0.6.0 2019-03-27 11:22:36 +01:00
fdffc2791b memory for as.mo() 2019-03-15 13:57:25 +01:00
74e0ae21fd con WHONET, filter ab class 2019-03-05 22:47:42 +01:00
2565b60024 rlang dependency, new fungi 2019-02-28 13:56:28 +01:00
f9ded23023 as.mo improvement 2019-02-26 12:33:26 +01:00
68a9a35ed6 algorithm update 2019-02-21 18:55:52 +01:00
54f8258f8c Catalogue of Life, replaces ITIS 2019-02-18 02:33:37 +01:00
9209787a53 SPSS tutorial 2019-02-14 15:18:17 +01:00
efb2af9e3a benchmarks plots 2019-02-14 10:23:51 +01:00
c56b179857 as.rsi warning, site update 2019-02-09 22:16:24 +01:00
bb7c9cfefe website update 2019-01-29 21:25:16 +01:00
3efb54d016 freq update 2019-01-29 20:20:09 +01:00
6aae206320 WHONET/EARS-Net support 2019-01-29 00:06:50 +01:00
f836722269 atc_ functions 2019-01-26 23:22:56 +01:00
f4ff98b470 WHO update, antibiotics update 2019-01-25 13:18:41 +01:00
c6c3088e9f select() fix for freq 2019-01-17 12:08:04 +01:00
046d195064 resistance predict 2019-01-15 12:45:24 +01:00
5aad26035c edited g.test 2019-01-12 11:06:58 +01:00
641d866db2 guess_ab_col, benchmarks 2019-01-11 20:37:23 +01:00
193a2d2863 EUCAST update, as.mo bugfix for empty vlaues 2019-01-08 16:23:45 +01:00
6652f7d82b fix warnings 2019-01-04 09:49:42 +01:00
6b2d464f8c big website update, licence txt update 2019-01-02 23:24:07 +01:00
4255707cb7 website update 2018-12-31 14:30:06 +01:00
2e4d703338 eucast rules fix, 1st isolate fix, website update 2018-12-31 01:48:53 +01:00
df6b334c6f website update 2018-12-30 10:27:28 +01:00
92a32b62a7 new website, freq updates 2018-12-29 22:24:19 +01:00