1
0
mirror of https://github.com/msberends/AMR.git synced 2024-12-26 20:06:11 +01:00
Commit Graph

357 Commits

Author SHA1 Message Date
62e6f41961 website update 2019-05-29 00:36:48 +02:00
27380fa021 fixes for microorganisms.codes 2019-05-28 16:50:40 +02:00
7e0e171512 website update 2019-05-23 19:39:07 +02:00
3688fcaabf doc fix 2019-05-23 17:59:43 +02:00
bbf8b611e3 doc fix 2019-05-23 17:35:58 +02:00
60983a1640 added mdr_tb() 2019-05-23 16:58:59 +02:00
07d26cd485 faster determination of abx 2019-05-20 19:12:41 +02:00
6eb08a2ea3 new git flow to repository 2019-05-20 14:16:53 +02:00
4ca00e1868 speed improvement eucast_rules(), support more old MO codes 2019-05-20 12:00:18 +02:00
b0033dae1b website update 2019-05-17 20:22:04 +02:00
c3ae6b7699 freq fix 2019-05-17 09:09:18 +02:00
5eda991c47 ab_info fix 2019-05-16 22:07:31 +02:00
4c3cf85a65 ab_info, other bug fixes 2019-05-16 21:20:00 +02:00
f6bf54b37d documentation fix 2019-05-13 20:16:51 +02:00
2ea0c93e44 documentation fix 2019-05-13 16:35:48 +02:00
cc403169c6 first isolate missing dates fix 2019-05-13 14:56:23 +02:00
0dc0715dc6 CI tests 2019-05-13 12:21:57 +02:00
38a4421450 CI tests 2019-05-13 10:10:16 +02:00
fcc77164e9 mdro fix 2019-05-11 23:30:10 +02:00
68cc7ef0d0 new antibiotics 2019-05-10 16:44:59 +02:00
73f1ee1159 freq/age fix 2019-04-11 00:54:48 +02:00
461eec9bac cfta streptococci, codecov.yml 2019-04-09 14:59:17 +02:00
cffb7787d8 cfta streptococci 2019-04-09 10:34:40 +02:00
30b559827c documentation update 2019-04-07 22:40:02 +02:00
51fdc5d6cc self-learning off 2019-04-06 09:38:23 +02:00
fbc9191b13 new EUCAST rules algorithm 2019-04-05 18:47:39 +02:00
56d4b4719f ci for devel and freq fix 2019-03-29 21:45:46 +01:00
7dca9791a2 v0.6.1 2019-03-28 22:30:19 +01:00
713290a9a6 v0.6.1 2019-03-28 22:05:03 +01:00
b25f2d6213 v0.6.1 2019-03-28 21:33:28 +01:00
8a1d384d9c ci fixes 2019-03-26 15:34:04 +01:00
afd12d5486 ci fixes 2019-03-26 14:42:56 +01:00
29f444543d added Becker 2019 2019-03-26 14:24:03 +01:00
c6a12266e7 DSMZ data 2019-03-18 14:29:41 +01:00
b561de462a global var 2019-03-15 20:15:56 +01:00
e18a1f1f17 as.mo improvement 2019-03-15 17:36:42 +01:00
fdffc2791b memory for as.mo() 2019-03-15 13:57:25 +01:00
504a042fba uncertainty levels, new WHONET codes 2019-03-12 12:19:27 +01:00
b319b89750 WHONET fix 2019-03-09 08:21:00 +01:00
0c0c6e289b small as.mo fix 2019-03-06 14:39:02 +01:00
5c7a061a5d filter_ab_class fix 2019-03-06 09:32:48 +01:00
74e0ae21fd con WHONET, filter ab class 2019-03-05 22:47:42 +01:00
e835525cf6 unknown codes, rsi fix 2019-03-02 22:47:04 +01:00
c5efb272fd mo_source improvement 2019-03-01 09:34:04 +01:00
2565b60024 rlang dependency, new fungi 2019-02-28 13:56:28 +01:00
cf3bdb54c7 global var fix 2019-02-27 19:02:47 +01:00
95c49fdf79 global var fix 2019-02-27 17:39:39 +01:00
642f6571fe as.mo fix 2019-02-27 14:22:07 +01:00
54162522bd age_groups fix 2019-02-27 11:36:12 +01:00
4ba2ff68e0 language fix 2019-02-26 13:02:04 +01:00
f9ded23023 as.mo improvement 2019-02-26 12:33:26 +01:00
f25a4b3679 as.mo improvements 2019-02-25 16:07:21 +01:00
c506d2893b as.mo improvements 2019-02-25 15:52:32 +01:00
0ec76cfa98 as.mo improvement 2019-02-25 10:42:57 +01:00
e65d1a3036 as.mo improvement 2019-02-23 21:49:02 +01:00
f16a152d06 as.mo improvements 2019-02-23 18:08:28 +01:00
1a6314769b as.mo improvement 2019-02-23 16:02:31 +01:00
41ad7a22c8 mo_rank mo_url, added Tremellales 2019-02-22 22:12:10 +01:00
6c542268be unit tests 2019-02-21 23:32:30 +01:00
68a9a35ed6 algorithm update 2019-02-21 18:55:52 +01:00
13120f465f website update 2019-02-20 13:57:23 +01:00
8dc027309e website update 2019-02-20 10:38:24 +01:00
fb1fc3686c Catalogue of life 2019-02-20 00:04:48 +01:00
54f8258f8c Catalogue of Life, replaces ITIS 2019-02-18 02:33:37 +01:00
efb2af9e3a benchmarks plots 2019-02-14 10:23:51 +01:00
ae44b185e6 fix freq length calculation 2019-02-13 17:14:59 +01:00
30ff770c93 freq update 2019-02-12 15:38:31 +01:00
76ed26d27e resistance predict update 2019-02-11 10:27:10 +01:00
c56b179857 as.rsi warning, site update 2019-02-09 22:16:24 +01:00
ed30312048 mo codes for WHONET 2019-02-08 16:06:54 +01:00
3d3366faf7 is.rsi.eligible update 2019-02-04 18:04:29 +01:00
587e00b7be is.rsi.eligible update 2019-02-04 12:24:07 +01:00
cd07d65734 freq and website update 2019-02-01 16:55:55 +01:00
d75ec01f92 website update 2019-01-30 19:52:58 +01:00
0b3dc0231f freq fix 2019-01-30 16:00:55 +01:00
e6489483c7 website update 2019-01-29 20:38:45 +01:00
3efb54d016 freq update 2019-01-29 20:20:09 +01:00
6aae206320 WHONET/EARS-Net support 2019-01-29 00:06:50 +01:00
f6336fdd89 quasiquotation for freq() 2019-01-28 11:20:32 +01:00
63e343d555 deps fix 2019-01-27 20:49:11 +01:00
e76961a66b less deps 2019-01-27 19:30:40 +01:00
a2d3ea280a text updates 2019-01-27 13:55:23 +01:00
18b75356a9 re-add atc_ddd and atc_groups 2019-01-27 13:33:43 +01:00
6ec940bc75 atc_ functions 2019-01-27 10:53:59 +01:00
b39055c018 deprecated fix 2019-01-27 00:33:58 +01:00
f836722269 atc_ functions 2019-01-26 23:22:56 +01:00
5493e1f05d website update 2019-01-25 20:47:57 +01:00
f4ff98b470 WHO update, antibiotics update 2019-01-25 13:18:41 +01:00
9529d097b6 as.mo 2019-01-21 21:24:40 +01:00
46dcc7e2e8 set_mo_source 2019-01-21 15:53:01 +01:00
c6c3088e9f select() fix for freq 2019-01-17 12:08:04 +01:00
1ee710c861 resistance predict 2019-01-15 16:51:49 +01:00
8db87a15e9 fixes 2019-01-15 16:38:54 +01:00
046d195064 resistance predict 2019-01-15 12:45:24 +01:00
cda7087722 website update 2019-01-12 19:31:30 +01:00
3661df7365 direct warning if failing as.mo 2019-01-12 16:45:20 +01:00
5aad26035c edited g.test 2019-01-12 11:06:58 +01:00
641d866db2 guess_ab_col, benchmarks 2019-01-11 20:37:23 +01:00
193a2d2863 EUCAST update, as.mo bugfix for empty vlaues 2019-01-08 16:23:45 +01:00
bc15f660d6 guess_ab() 2019-01-06 20:23:49 +01:00