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mirror of https://github.com/msberends/AMR.git synced 2024-12-26 20:06:11 +01:00
Commit Graph

109 Commits

Author SHA1 Message Date
6eb08a2ea3 new git flow to repository 2019-05-20 14:16:53 +02:00
fdffc2791b memory for as.mo() 2019-03-15 13:57:25 +01:00
c2aea67e84 website update 2019-02-22 01:42:35 +01:00
13120f465f website update 2019-02-20 13:57:23 +01:00
76ed26d27e resistance predict update 2019-02-11 10:27:10 +01:00
96495d363a README update 2019-02-10 09:31:35 +01:00
c56b179857 as.rsi warning, site update 2019-02-09 22:16:24 +01:00
3370a4091c CI fix 2019-01-27 11:15:59 +01:00
6ec940bc75 atc_ functions 2019-01-27 10:53:59 +01:00
c6c3088e9f select() fix for freq 2019-01-17 12:08:04 +01:00
9600eb55d9 README url update 2019-01-06 20:38:17 +01:00
2c798547bf language 2019-01-05 21:40:04 +01:00
6b2d464f8c big website update, licence txt update 2019-01-02 23:24:07 +01:00
2e4d703338 eucast rules fix, 1st isolate fix, website update 2018-12-31 01:48:53 +01:00
92a32b62a7 new website, freq updates 2018-12-29 22:24:19 +01:00
92d2553dfe gitlab pages 2018-12-23 21:26:21 +01:00
01a6d56334 add kingdom to mo_taxonomy 2018-12-10 21:47:25 +01:00
5cfa5bbfe3 v0.5.0 2018-11-30 16:16:04 +01:00
9ddf6dc530 support A. species for as.mo, cleanup 2018-11-24 20:25:09 +01:00
6b0f4ffbd4 new kingdom 2018-11-09 13:11:54 +01:00
d15bb2ab3f read_4D 2018-11-05 15:30:49 +01:00
d07e9b904e new function get_locale 2018-11-05 13:20:32 +01:00
d0bc05e5b1 speed improvement is.rsi.eligible 2018-11-02 14:55:29 +01:00
40a159e78d more unit tests 2018-11-02 10:27:57 +01:00
5476fecc73 eucast update 2018-11-01 20:23:33 +01:00
d3f5236690 simplify gitlab ci 2018-10-31 13:42:35 +01:00
9cd4ab928a speed improvement as.mo, freq title 2018-10-31 12:10:49 +01:00
160e025609 try to fix gitlab pipelines 2018-10-23 19:49:31 +02:00
87757748bd switch to gitlab 2018-10-23 16:49:40 +02:00
299c5bea43 na freq, removed factors 2018-10-23 09:42:26 +02:00
c2a93b46db breaks param, tidyr dep change, freq markdown 2018-10-22 12:32:59 +02:00
5727800b9a readme fix 2018-10-18 21:43:12 +02:00
0ef91be3ac param rules for EUCAST 2018-10-18 12:10:10 +02:00
693f64bdbf new EUCAST rules: clinical breakpoints 2018-10-17 17:32:34 +02:00
95c9fdc552 CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
2018-10-09 13:53:33 +02:00
c7c57f4042 0.4.0, just published on CRAN 2018-10-01 19:36:42 +02:00
6d761436f7 benchmarks on readme and speed improvement for direct mo codes 2018-10-01 16:26:02 +02:00
3119a221e5 authors from ITIS, diff for freq 2018-10-01 11:39:43 +02:00
92c9cc2608 diff for freq, fix for mo_shortname 2018-09-29 21:54:32 +02:00
a6aa9e95fb completed old taxonomic names 2018-09-28 20:13:13 +02:00
768fe17324 removed clipboard functions as it violated CRAN policies 2018-09-28 16:05:18 +02:00
450992baea new: 1680 old taxonomic names 2018-09-25 16:44:40 +02:00
9c566585b0 first inclusion of ITIS data 2018-09-24 23:33:29 +02:00
5d80cef338 added taxonomic data from ITIS 2018-09-17 20:53:32 +02:00
db14781593 add labels_rsi_count 2018-09-16 22:11:17 +02:00
b792a2754e added prevalence column and alterted as.mo algorith to use it, added ab_name as alias 2018-09-16 16:43:29 +02:00
cb0d74a4f0 support for French and Italian, added quote to freq 2018-09-10 15:45:25 +02:00
b83e6a9380 algoritm improvement, removed all Catabacter except for C. hongkongensis 2018-09-10 11:40:54 +02:00
26f5be0033 support for portuguese, language determination based on system 2018-09-08 16:06:47 +02:00
790bd1622d added vanA to vanE positive Enterococci 2018-09-05 09:49:19 +02:00