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mirror of https://github.com/msberends/AMR.git synced 2024-12-26 19:26:12 +01:00
Commit Graph

78 Commits

Author SHA1 Message Date
1d423cca89 (v0.7.1.9035) cephalosporins and unit tests 2019-08-11 19:07:26 +02:00
3f5828e74a (v0.7.1.9034) mo.codes fix for Dracunculus spp. 2019-08-09 23:45:26 +02:00
6598c5615d (v0.7.1.9033) 5000 new fungi 2019-08-09 23:22:10 +02:00
3a1f960f89 (v0.7.1.9024) eucast_rules() fix, new MOs 2019-08-06 14:39:22 +02:00
9ac5a34b36 (v0.7.1.9014) MO codes update 2019-07-16 16:14:11 +02:00
d9e257f8db (v0.7.1.9008) ab update 2019-07-04 19:08:18 +02:00
65c6702b21 (v0.7.1.9004) atc class removal 2019-06-27 11:57:45 +02:00
c9156c004a (v0.7.0.9013) mo_synonym fix 2019-06-22 14:49:12 +02:00
254745061c (v0.7.0.9008) T. vaginalis, rsi_df 2019-06-13 14:28:46 +02:00
8f674e19bb (v0.7.0.9005) ab algorithm update 2019-06-11 14:18:25 +02:00
0a6580b4eb (v0.6.1.9047) ggplot fix 2019-05-31 20:48:22 +02:00
27380fa021 fixes for microorganisms.codes 2019-05-28 16:50:40 +02:00
60983a1640 added mdr_tb() 2019-05-23 16:58:59 +02:00
4c3cf85a65 ab_info, other bug fixes 2019-05-16 21:20:00 +02:00
fcc77164e9 mdro fix 2019-05-11 23:30:10 +02:00
68cc7ef0d0 new antibiotics 2019-05-10 16:44:59 +02:00
fbc9191b13 new EUCAST rules algorithm 2019-04-05 18:47:39 +02:00
29f444543d added Becker 2019 2019-03-26 14:24:03 +01:00
c6a12266e7 DSMZ data 2019-03-18 14:29:41 +01:00
504a042fba uncertainty levels, new WHONET codes 2019-03-12 12:19:27 +01:00
e835525cf6 unknown codes, rsi fix 2019-03-02 22:47:04 +01:00
2565b60024 rlang dependency, new fungi 2019-02-28 13:56:28 +01:00
f9ded23023 as.mo improvement 2019-02-26 12:33:26 +01:00
41ad7a22c8 mo_rank mo_url, added Tremellales 2019-02-22 22:12:10 +01:00
fb1fc3686c Catalogue of life 2019-02-20 00:04:48 +01:00
54f8258f8c Catalogue of Life, replaces ITIS 2019-02-18 02:33:37 +01:00
efb2af9e3a benchmarks plots 2019-02-14 10:23:51 +01:00
ed30312048 mo codes for WHONET 2019-02-08 16:06:54 +01:00
587e00b7be is.rsi.eligible update 2019-02-04 12:24:07 +01:00
3efb54d016 freq update 2019-01-29 20:20:09 +01:00
6aae206320 WHONET/EARS-Net support 2019-01-29 00:06:50 +01:00
f4ff98b470 WHO update, antibiotics update 2019-01-25 13:18:41 +01:00
46dcc7e2e8 set_mo_source 2019-01-21 15:53:01 +01:00
31e977937d fix for as.mo and freq 2018-11-30 12:05:59 +01:00
9ddf6dc530 support A. species for as.mo, cleanup 2018-11-24 20:25:09 +01:00
6b0f4ffbd4 new kingdom 2018-11-09 13:11:54 +01:00
9cd4ab928a speed improvement as.mo, freq title 2018-10-31 12:10:49 +01:00
86b03577a7 fix for as.mo, added also_single_tested 2018-10-19 13:53:31 +02:00
693f64bdbf new EUCAST rules: clinical breakpoints 2018-10-17 17:32:34 +02:00
5b5b95a47b count_all and some fixes 2018-10-12 16:35:18 +02:00
95c9fdc552 CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
2018-10-09 13:53:33 +02:00
ed17db0263 renamed year columns to ref 2018-10-01 14:44:40 +02:00
3119a221e5 authors from ITIS, diff for freq 2018-10-01 11:39:43 +02:00
92c9cc2608 diff for freq, fix for mo_shortname 2018-09-29 21:54:32 +02:00
a6aa9e95fb completed old taxonomic names 2018-09-28 20:13:13 +02:00
2b0080995e speed improvement for as.mo, more old taxonomic names 2018-09-27 23:23:48 +02:00
450992baea new: 1680 old taxonomic names 2018-09-25 16:44:40 +02:00
9c566585b0 first inclusion of ITIS data 2018-09-24 23:33:29 +02:00
5d80cef338 added taxonomic data from ITIS 2018-09-17 20:53:32 +02:00
b792a2754e added prevalence column and alterted as.mo algorith to use it, added ab_name as alias 2018-09-16 16:43:29 +02:00