1
0
mirror of https://github.com/msberends/AMR.git synced 2025-04-19 07:53:54 +02:00

86 Commits

Author SHA1 Message Date
63099cd81e
(v2.1.1.9232) is.mic() iteration, documentation cleanup 2025-03-31 10:51:31 +02:00
49da312506
(v2.1.1.9228) repo cleaning 2025-03-28 11:17:49 +01:00
d77ad6bd6e
(v2.1.1.9227) unit test fixes 2025-03-27 15:36:27 +01:00
969a42cc8c
(v2.1.1.9226) update intrinsic_resistant, unit test fixes 2025-03-27 15:20:22 +01:00
e6f88241b2
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex 2025-03-26 17:19:17 +01:00
287e361a54
(v2.1.1.9218) Fix unit tests 2025-03-19 16:05:24 +01:00
7f1ae1f474
(v2.1.1.9203) unit tests 2025-03-15 13:25:23 +01:00
f758ab60f3
run MICs and disks if detected 2025-03-14 17:23:24 +01:00
6cc273bbc7
(v2.1.1.9201) oops 2025-03-14 17:12:12 +01:00
72f2e723fb
(v2.1.1.9200) new argument capped_mic_handling, add Search to website 2025-03-14 17:01:50 +01:00
eafe9bd113
(v2.1.1.9197) Final fixes for vetmed 2025-03-13 15:51:58 +01:00
861331b1df
(v2.1.1.9196) fix eucast, unit tests 2025-03-13 15:38:39 +01:00
9aab129ea6
(v2.1.1.9195) add BTL-S, fix ranks in unknown microorganisms 2025-03-13 14:30:14 +01:00
a7ef22a21e
(v2.1.1.9194) new argument for missing R breakpoints - updated from WHONET 2025-03-12 16:24:38 +01:00
9a9468fa84
(v2.1.1.9182) fix AMR selectors for tidymodels, add unit tests 2025-03-03 12:59:27 +01:00
07efc292bc
(v2.1.1.9163) cleanup 2025-02-27 14:04:29 +01:00
aa8f6af185
(v2.1.1.9155) new mic_p50() and mic_p90() - updated AMR intro 2025-02-23 11:18:08 +01:00
d94efb0f5e
(v2.1.1.9147) scale fixes and WISCA update, fix conserved capped values 2025-02-14 14:16:46 +01:00
419cb5b9c4 (v2.1.1.9112) unit test 2024-12-06 18:01:54 +01:00
87271d261a add Python package to repo 2024-11-21 10:06:26 +01:00
da6321c504 (v2.1.1.9102) fix sir 2024-10-18 10:58:57 +02:00
11b1dc2b02 Fix Py 2024-10-17 15:28:13 +02:00
5c4d8fcd2a (v2.1.1.9095) Python support 2024-10-15 17:12:55 +02:00
94501371cd (v2.1.1.9094) fix antibiotics 2024-10-10 16:38:20 +02:00
a558f4c121 (v2.1.1.9080) fix rescale_mic() for an outside MIC range 2024-09-24 22:39:40 +02:00
1ca40e8d67 (v2.1.1.9079) fix for uti in as.sir() 2024-09-24 15:34:12 +02:00
4e96a56b6a (v2.1.1.9073) unit tests 2024-09-19 13:57:36 +02:00
ddb23b6e73 (v2.1.1.9071) update veterinary SIR interpretation, add only_fungi 2024-09-19 11:44:56 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
82585901a7 (v2.1.1.9061) animal host fix 2024-06-19 15:41:45 +02:00
c67d003e9e (v2.1.1.9060) SDD results now in as.sir() 2024-06-19 15:08:23 +02:00
0c3d81f32e (v2.1.1.9059) documentation fix 2024-06-17 22:26:05 +02:00
1bc2e04e1c (v2.1.1.9058) fix hosts, add translations 2024-06-17 22:19:38 +02:00
a4dc37a4e4 (v2.1.1.9057) fix for missing breakpoints 2024-06-17 16:52:12 +02:00
d9e66fb118 (v2.1.1.9056) example fix 2024-06-17 14:52:18 +02:00
1e65b5a289 (v2.1.1.9055) example fix 2024-06-17 14:36:40 +02:00
13baf8d7be (v2.1.1.9054) fix examples 2024-06-17 13:52:02 +02:00
2dee1d71dc (v2.1.1.9053) add verbose to as.sir(), unit test fix 2024-06-17 10:38:45 +02:00
68f7795481 (v2.1.1.9052) unit test fix 2024-06-16 20:53:50 +02:00
bdbf5198a2 (v2.1.1.9050) vctrs fix for sir, small documentation fixes 2024-06-15 15:33:49 +02:00
9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N 2024-06-14 22:39:01 +02:00
de17de1be9 (v2.1.1.9048) vctrs update for sir 2024-06-13 20:55:17 +02:00
c753afcd76 (v2.1.1.9045) fix host in animal guidelines 2024-06-12 10:32:43 +02:00
31207952d3 (v2.1.1.9043) fix sir translation with as.double 2024-06-10 10:34:45 +02:00
a3071cf58b (v2.1.1.9042) update translations and example isolates 2024-06-09 11:31:04 +02:00
c5981cdeb3 fix unit test 2024-06-04 20:17:54 +02:00
7c1b564648 fix SIR interpretation for uti 2024-05-31 21:24:35 +02:00
60c6c21e45 fix SIR interpretation 2024-05-31 09:50:54 +02:00
ba4dc20cf3 autoplot fix 2024-05-30 16:39:59 +02:00
d4490c7f25 fix sorting of MICs, MIC autoplot titles 2024-05-30 15:50:17 +02:00