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AMR
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90 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 6b0f4ffbd4 new kingdom 2018-11-09 13:11:54 +01:00
dr. M.S. (Matthijs) Berends d15bb2ab3f read_4D 2018-11-05 15:30:49 +01:00
dr. M.S. (Matthijs) Berends d07e9b904e new function get_locale 2018-11-05 13:20:32 +01:00
dr. M.S. (Matthijs) Berends d0bc05e5b1 speed improvement is.rsi.eligible 2018-11-02 14:55:29 +01:00
dr. M.S. (Matthijs) Berends 40a159e78d more unit tests 2018-11-02 10:27:57 +01:00
dr. M.S. (Matthijs) Berends 5476fecc73 eucast update 2018-11-01 20:23:33 +01:00
dr. M.S. (Matthijs) Berends d3f5236690 simplify gitlab ci 2018-10-31 13:42:35 +01:00
dr. M.S. (Matthijs) Berends 9cd4ab928a speed improvement as.mo, freq title 2018-10-31 12:10:49 +01:00
dr. M.S. (Matthijs) Berends 160e025609 try to fix gitlab pipelines 2018-10-23 19:49:31 +02:00
dr. M.S. (Matthijs) Berends 87757748bd switch to gitlab 2018-10-23 16:49:40 +02:00
dr. M.S. (Matthijs) Berends 299c5bea43 na freq, removed factors 2018-10-23 09:42:26 +02:00
dr. M.S. (Matthijs) Berends c2a93b46db breaks param, tidyr dep change, freq markdown 2018-10-22 12:32:59 +02:00
dr. M.S. (Matthijs) Berends 5727800b9a readme fix 2018-10-18 21:43:12 +02:00
dr. M.S. (Matthijs) Berends 0ef91be3ac param rules for EUCAST 2018-10-18 12:10:10 +02:00
dr. M.S. (Matthijs) Berends 693f64bdbf new EUCAST rules: clinical breakpoints 2018-10-17 17:32:34 +02:00
dr. M.S. (Matthijs) Berends 95c9fdc552 CRAN fixes for release 0.4.0 
https://cran.r-project.org/web/checks/check_results_AMR.html
 2018-10-09 13:53:33 +02:00
dr. M.S. (Matthijs) Berends c7c57f4042 0.4.0, just published on CRAN 2018-10-01 19:36:42 +02:00
dr. M.S. (Matthijs) Berends 6d761436f7 benchmarks on readme and speed improvement for direct mo codes 2018-10-01 16:26:02 +02:00
dr. M.S. (Matthijs) Berends 3119a221e5 authors from ITIS, diff for freq 2018-10-01 11:39:43 +02:00
dr. M.S. (Matthijs) Berends 92c9cc2608 diff for freq, fix for mo_shortname 2018-09-29 21:54:32 +02:00
dr. M.S. (Matthijs) Berends a6aa9e95fb completed old taxonomic names 2018-09-28 20:13:13 +02:00
dr. M.S. (Matthijs) Berends 768fe17324 removed clipboard functions as it violated CRAN policies 2018-09-28 16:05:18 +02:00
dr. M.S. (Matthijs) Berends 450992baea new: 1680 old taxonomic names 2018-09-25 16:44:40 +02:00
dr. M.S. (Matthijs) Berends 9c566585b0 first inclusion of ITIS data 2018-09-24 23:33:29 +02:00
dr. M.S. (Matthijs) Berends 5d80cef338 added taxonomic data from ITIS 2018-09-17 20:53:32 +02:00
dr. M.S. (Matthijs) Berends db14781593 add labels_rsi_count 2018-09-16 22:11:17 +02:00
dr. M.S. (Matthijs) Berends b792a2754e added prevalence column and alterted as.mo algorith to use it, added ab_name as alias 2018-09-16 16:43:29 +02:00
dr. M.S. (Matthijs) Berends cb0d74a4f0 support for French and Italian, added quote to freq 2018-09-10 15:45:25 +02:00
dr. M.S. (Matthijs) Berends b83e6a9380 algoritm improvement, removed all Catabacter except for C. hongkongensis 2018-09-10 11:40:54 +02:00
dr. M.S. (Matthijs) Berends 26f5be0033 support for portuguese, language determination based on system 2018-09-08 16:06:47 +02:00
dr. M.S. (Matthijs) Berends 790bd1622d added vanA to vanE positive Enterococci 2018-09-05 09:49:19 +02:00
dr. M.S. (Matthijs) Berends b388e3fee7 Support for German and Spanish microorganism properties, cleanup 2018-09-04 11:33:30 +02:00
dr. M.S. (Matthijs) Berends 75fe4d401f new MOs, cleanup 2018-09-01 21:19:46 +02:00
dr. M.S. (Matthijs) Berends 5965d3c794 replaced bactid by mo 2018-08-31 13:36:19 +02:00
dr. M.S. (Matthijs) Berends d9e68e0a50 ggplot_rsi example update, more unit tests 2018-08-29 16:25:57 +02:00
dr. M.S. (Matthijs) Berends 029157b3be 163 new trade names, added ab_tradenames 2018-08-29 12:27:37 +02:00
dr. M.S. (Matthijs) Berends 972fc4f6c7 ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid 2018-08-28 13:51:13 +02:00
dr. M.S. (Matthijs) Berends 2acdb1981c atc and bactid functions, readme update 2018-08-25 22:01:14 +02:00
dr. M.S. (Matthijs) Berends febd0ca885 geom_rsi - any parameter 2018-08-23 21:27:15 +02:00
dr. M.S. (Matthijs) Berends 3e87c8f409 count_* functions 2018-08-22 00:02:26 +02:00
dr. M.S. (Matthijs) Berends 8bad33858e readme typo 2018-08-15 11:12:38 +02:00
dr. M.S. (Matthijs) Berends 1699d7b8b3 better example of grouping variable in ggplot_rsi 2018-08-14 12:07:03 +02:00
dr. M.S. (Matthijs) Berends 533342583a Travis checks 2018-08-14 11:37:40 +02:00
dr. M.S. (Matthijs) Berends 7584c929a5 new AppVeyor environment 2018-08-14 08:57:17 +02:00
dr. M.S. (Matthijs) Berends e5193c7749 AppVeyor 2018-08-13 23:05:53 +02:00
dr. M.S. (Matthijs) Berends 59ce1eb1b1 ggplot_rsi improvements 2018-08-13 16:42:37 +02:00
dr. M.S. (Matthijs) Berends ce2cdb9309 support groups for portion_df, update README 2018-08-12 22:34:03 +02:00
dr. M.S. (Matthijs) Berends e5d32cafe0 new unit tests for ggplot, small fixes 2018-08-12 17:44:06 +02:00
dr. M.S. (Matthijs) Berends 1ba7d883fe new ggplot enhancement 2018-08-11 21:30:00 +02:00
dr. M.S. (Matthijs) Berends 53fa198e35 new portion functions 2018-08-10 15:01:05 +02:00