 dr. M.S. (Matthijs) Berends
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640888f408
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(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
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2024-07-16 14:53:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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7be4dabbc0
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support veterinary MIC/disk translation
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2024-02-24 15:16:52 +01:00 |
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dr. M.S. (Matthijs) Berends
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ca72a646d0
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scientific notation for MICs
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2023-10-20 15:45:00 +02:00 |
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dr. M.S. (Matthijs) Berends
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7cda9e575b
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prepare for CRAN
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2023-10-20 14:51:48 +02:00 |
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dr. M.S. (Matthijs) Berends
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7a4628b73f
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Added C. freundii complex and Y. pseudotuberculosis complex
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2023-07-14 10:49:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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eff164ecb1
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indicate unique identifiers
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2023-07-12 21:26:32 +02:00 |
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dr. M.S. (Matthijs) Berends
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acb534102b
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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dr. M.S. (Matthijs) Berends
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2d97cca6d9
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fix `reference_df` endless loop
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2023-06-26 13:52:02 +02:00 |
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dr. M.S. (Matthijs) Berends
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c6135d2082
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updated microorganism codes
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2023-05-26 16:10:01 +02:00 |
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dr. M.S. (Matthijs) Berends
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91fa73dedf
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add oxygen tolerance
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2023-05-11 21:56:27 +02:00 |
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dr. M.S. (Matthijs) Berends
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ed70f95380
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Fix clinical breakpoints
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2023-04-14 23:14:34 +02:00 |
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dr. M.S. (Matthijs) Berends
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147f9112e9
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Fix some WHONET codes
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2023-04-14 11:12:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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dad25302f2
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make `rsi` work in more cases, documentation update
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2023-02-22 14:38:57 +01:00 |
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dr. M.S. (Matthijs) Berends
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bc434db835
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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1a0dc4bf46
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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9e99e66f01
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use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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dr. M.S. (Matthijs) Berends
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830c67f1bf
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documentation, unit tests
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2023-01-24 10:20:27 +01:00 |
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dr. M.S. (Matthijs) Berends
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f0a2cdbf5e
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update mo algorithm
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2022-12-20 16:14:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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b1b7534c78
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incorporate Bartlett et al (2022)
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2022-12-19 15:32:41 +01:00 |
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dr. M.S. (Matthijs) Berends
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23fe427cbc
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Fixes for Salmonella
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2022-12-17 14:31:33 +01:00 |
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dr. M.S. (Matthijs) Berends
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5f3a7694aa
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microorganisms update, added Salmonella groups
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2022-12-16 16:10:43 +01:00 |
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dr. M.S. (Matthijs) Berends
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8da2467209
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updated taxonomy
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2022-12-12 00:14:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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6ad7857d39
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fix missing R breakpoints
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2022-10-29 14:15:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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c2801ba7a1
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new rsi_translation
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2022-10-22 22:00:15 +02:00 |
Dr. Matthijs Berends
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cd2acc4a29
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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fbd5d32541
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small fixes
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2022-08-29 09:35:36 +02:00 |
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dr. M.S. (Matthijs) Berends
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303d61b473
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new tibble export
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2022-08-27 20:49:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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952d16de33
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new, automated website
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2022-08-21 16:37:20 +02:00 |
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dr. M.S. (Matthijs) Berends
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7f981e7778
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(v1.8.1.9013) add Toxoplasma
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2022-06-10 13:15:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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18e8525d10
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(v1.8.0.9001) as.mo improvement, fixes #52
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2022-02-26 21:58:23 +01:00 |
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dr. M.S. (Matthijs) Berends
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76dee66852
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(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
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2021-12-14 22:39:23 +01:00 |
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dr. M.S. (Matthijs) Berends
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5375f75829
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(v1.7.1.9056) unit tests
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2021-11-29 11:55:18 +01:00 |
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dr. M.S. (Matthijs) Berends
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c8698347cb
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(v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers
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2021-11-29 10:38:38 +01:00 |
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dr. M.S. (Matthijs) Berends
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37e6e35ec4
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(v1.7.1.9051) updated taxonomy, updated git branch name
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2021-10-06 13:23:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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bef0f42f66
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(v1.7.0.9001) CLSI 2020 guideline
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2021-06-01 15:33:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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c6289c3fc3
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(v1.6.0.9007) documentation custom eucast rules, progress bar as.mo
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2021-04-20 10:46:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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4e0a9533ad
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(v1.5.0.9041) SNOMED update
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2021-03-11 21:42:30 +01:00 |
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dr. M.S. (Matthijs) Berends
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0e0e3c4ffa
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(v1.5.0.9029) added missing families and orders
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2021-03-05 01:31:46 +01:00 |
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dr. M.S. (Matthijs) Berends
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ddf88345f1
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(v1.5.0.9028) Updated taxonomy until March 2021
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2021-03-04 23:28:32 +01:00 |
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dr. M.S. (Matthijs) Berends
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2eca8c3f01
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(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
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2021-02-02 23:57:35 +01:00 |
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dr. M.S. (Matthijs) Berends
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4eab095306
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(v1.5.0.9006) major documentation update
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2021-01-18 16:57:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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d014955ce0
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(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
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2021-01-12 22:08:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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3b84b8be75
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v1.5.0
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2021-01-06 11:16:17 +01:00 |
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dr. M.S. (Matthijs) Berends
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ee70883246
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(v1.4.0.9042) auto dark theme website
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2020-12-21 22:46:29 +01:00 |
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dr. M.S. (Matthijs) Berends
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2145f1d1ba
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(v1.4.0.9033) documentation update
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2020-12-08 12:37:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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28e77680c5
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(v1.4.0) matching score update
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2020-10-08 11:16:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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4e40e42011
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(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix
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2020-09-18 16:05:53 +02:00 |
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dr. M.S. (Matthijs) Berends
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c8c8bb4e3a
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(v1.3.0.9006) website update
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2020-08-21 11:40:13 +02:00 |
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dr. M.S. (Matthijs) Berends
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08d62bb5d5
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(v1.3.0.9002) intrinsic_resistant data set
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2020-08-14 13:36:10 +02:00 |
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dr. M.S. (Matthijs) Berends
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1b65d76cfb
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(v1.2.0.9037) survey on website
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2020-07-28 18:39:57 +02:00 |