dr. M.S. (Matthijs) Berends
641b88c814
website update
2022-03-27 09:37:55 +02:00
dr. M.S. (Matthijs) Berends
0fb9a1b194
prerelease 1.8.1
2022-03-14 16:43:15 +01:00
dr. M.S. (Matthijs) Berends
45e9546538
prerelease 1.8.1
...
Merge branch 'development' of https://github.com/msberends/AMR into development
# Conflicts:
# docs/articles/AMR.html
# docs/articles/AMR_files/figure-html/disk_plots-1.png
# docs/articles/AMR_files/figure-html/disk_plots_mo_ab-1.png
# docs/articles/AMR_files/figure-html/mic_plots-1.png
# docs/articles/AMR_files/figure-html/mic_plots-2.png
# docs/articles/AMR_files/figure-html/mic_plots_mo_ab-1.png
# docs/articles/AMR_files/figure-html/mic_plots_mo_ab-2.png
# docs/articles/AMR_files/figure-html/plot 1-1.png
# docs/articles/AMR_files/figure-html/plot 3-1.png
# docs/articles/AMR_files/figure-html/plot 4-1.png
# docs/articles/AMR_files/figure-html/plot 5-1.png
# docs/articles/EUCAST.html
# docs/articles/MDR.html
# docs/articles/PCA.html
# docs/articles/PCA_files/figure-html/unnamed-chunk-6-1.png
# docs/articles/PCA_files/figure-html/unnamed-chunk-7-1.png
# docs/articles/SPSS.html
# docs/articles/WHONET.html
# docs/articles/WHONET_files/figure-html/unnamed-chunk-7-1.png
# docs/articles/benchmarks.html
# docs/articles/benchmarks_files/figure-html/unnamed-chunk-4-1.png
# docs/articles/datasets.html
# docs/articles/resistance_predict.html
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-4-1.png
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-5-1.png
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-5-2.png
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-6-1.png
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-7-1.png
# docs/articles/welcome_to_AMR.html
# docs/news/index.html
# docs/pkgdown.yml
# docs/reference/AMR-deprecated.html
# docs/reference/AMR.html
# docs/reference/WHOCC.html
# docs/reference/WHONET.html
# docs/reference/antibiotics.html
# docs/reference/catalogue_of_life.html
# docs/reference/catalogue_of_life_version.html
# docs/reference/dosage.html
# docs/reference/example_isolates.html
# docs/reference/example_isolates_unclean.html
# docs/reference/g.test.html
# docs/reference/intrinsic_resistant.html
# docs/reference/microorganisms.codes.html
# docs/reference/microorganisms.html
# docs/reference/microorganisms.old.html
# docs/reference/rsi_translation.html
2022-03-14 16:37:37 +01:00
dr. M.S. (Matthijs) Berends
1b0983e382
(v1.8.1) prerelease 1.8.1
2022-03-14 16:36:10 +01:00
dr. M.S. (Matthijs) Berends
8c9feea087
website update
2022-03-12 19:53:29 +01:00
dr. M.S. (Matthijs) Berends
08d387b5ce
(v1.8.0.9005) as.rsi() fix
2022-03-10 19:33:25 +01:00
dr. M.S. (Matthijs) Berends
ad82bb4ce0
(v1.8.0.9004) MIC printing in tibbles
2022-03-03 21:11:02 +01:00
dr. M.S. (Matthijs) Berends
18e8525d10
(v1.8.0.9001) as.mo improvement, fixes #52
2022-02-26 21:58:23 +01:00
dr. M.S. (Matthijs) Berends
25cef46c59
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
dr. M.S. (Matthijs) Berends
76dee66852
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
2021-12-14 22:39:23 +01:00
dr. M.S. (Matthijs) Berends
578e7dfee9
(v1.7.1.9070) Better WHONET support
2021-12-13 10:18:28 +01:00
dr. M.S. (Matthijs) Berends
1e66a3daf3
(v1.7.1.9068) new logo, unit tests
2021-12-12 11:07:02 +01:00
dr. M.S. (Matthijs) Berends
56f1ce328a
(v1.7.1.9067) Support for Swedish and Russian
2021-12-12 09:42:03 +01:00
dr. M.S. (Matthijs) Berends
77ba4318ea
(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
2021-12-11 13:41:31 +01:00
dr. M.S. (Matthijs) Berends
e18c49ed93
(v1.7.1.9063) not_intrinsic_resistant
2021-12-09 10:48:25 +01:00
dr. M.S. (Matthijs) Berends
e63defe324
(v1.7.1.9062) website update
2021-12-06 11:12:30 +01:00
dr. M.S. (Matthijs) Berends
7965468ccd
(v1.7.1.9058) vars selection for set_ab_names()
2021-12-05 22:06:45 +01:00
dr. M.S. (Matthijs) Berends
9a2c431e16
(v1.7.1.9053) fortify() methods
2021-11-01 13:51:13 +01:00
dr. M.S. (Matthijs) Berends
37e6e35ec4
(v1.7.1.9051) updated taxonomy, updated git branch name
2021-10-06 13:23:57 +02:00
dr. M.S. (Matthijs) Berends
93a4734b44
(v1.7.1.9040) Support for Danish
2021-09-29 12:12:35 +02:00
dr. M.S. (Matthijs) Berends
d6a916d70b
(v1.7.1.9030) unit test
2021-08-29 23:50:45 +02:00
dr. M.S. (Matthijs) Berends
a44283f998
(v1.7.1.9024) unit tests
2021-08-17 14:34:11 +02:00
dr. M.S. (Matthijs) Berends
a2d249962f
(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
2021-08-16 21:54:34 +02:00
dr. M.S. (Matthijs) Berends
4e1efd902c
(v1.7.1.9022) rely on vctrs for ab selectors
2021-07-23 21:42:11 +02:00
dr. M.S. (Matthijs) Berends
fc946564d1
(v1.7.1.9019) Morganella MIC in EUCAST 2021
2021-07-12 12:28:41 +02:00
dr. M.S. (Matthijs) Berends
625a6fb304
(v1.7.1.9015) removed S3 taxonomic_name again
2021-07-07 20:34:05 +02:00
dr. M.S. (Matthijs) Berends
ad10693a1a
(v1.7.1.9014) rep() for S3 classes
2021-07-06 16:35:14 +02:00
dr. M.S. (Matthijs) Berends
5b5741f681
(v1.7.1.9011) subsetting taxonomy fix
2021-07-04 15:26:50 +02:00
dr. M.S. (Matthijs) Berends
7e70403efb
(v1.7.1) New CRAN release
2021-06-03 15:19:21 +02:00
dr. M.S. (Matthijs) Berends
bef0f42f66
(v1.7.0.9001) CLSI 2020 guideline
2021-06-01 15:33:06 +02:00
dr. M.S. (Matthijs) Berends
f406319503
(v1.7.0.9000) package size
2021-05-30 22:14:38 +02:00
dr. M.S. (Matthijs) Berends
ac73a8d849
v1.7.0
2021-05-24 15:29:17 +02:00
dr. M.S. (Matthijs) Berends
a13fd98e8b
(v1.6.0.9063) prepare new release
2021-05-24 09:00:11 +02:00
dr. M.S. (Matthijs) Berends
b210f1327c
(v1.6.0.9055) support codecov again
2021-05-21 20:20:51 +02:00
dr. M.S. (Matthijs) Berends
29dbfa2f49
(v1.6.0.9021) join functions update
2021-05-12 18:15:03 +02:00
dr. M.S. (Matthijs) Berends
c5fff1c95c
(v1.6.0.9011) unit tests
2021-04-27 10:27:13 +02:00
dr. M.S. (Matthijs) Berends
c6289c3fc3
(v1.6.0.9007) documentation custom eucast rules, progress bar as.mo
2021-04-20 10:46:17 +02:00
dr. M.S. (Matthijs) Berends
00d3e437a8
(v1.6.0.9003) like() fix
2021-04-16 11:41:05 +02:00
dr. M.S. (Matthijs) Berends
551f99dc8f
v1.6.0
2021-03-15 07:23:21 +01:00
dr. M.S. (Matthijs) Berends
4e0a9533ad
(v1.5.0.9041) SNOMED update
2021-03-11 21:42:30 +01:00
dr. M.S. (Matthijs) Berends
91dd755cac
(v1.5.0.9031) math processing of MICs
2021-03-05 15:36:39 +01:00
dr. M.S. (Matthijs) Berends
ddf88345f1
(v1.5.0.9028) Updated taxonomy until March 2021
2021-03-04 23:28:32 +01:00
dr. M.S. (Matthijs) Berends
601ea7377c
(v1.5.0.9019) use functions without loading AMR pkg
2021-02-17 10:58:13 +01:00
dr. M.S. (Matthijs) Berends
4a84894f79
(v1.5.0.9016) only_rsi_columns update, documentation
2021-02-08 14:18:42 +01:00
dr. M.S. (Matthijs) Berends
8fda473e49
(v1.5.0.9015) unit test fix, grouped first isolates
2021-02-04 16:48:16 +01:00
dr. M.S. (Matthijs) Berends
2eca8c3f01
(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
2021-02-02 23:57:35 +01:00
dr. M.S. (Matthijs) Berends
1ba44776a1
(v1.5.0.9008) Internal data sets to pkg, speed for auto col determination
2021-01-22 10:20:41 +01:00
dr. M.S. (Matthijs) Berends
4eab095306
(v1.5.0.9006) major documentation update
2021-01-18 16:57:56 +01:00
dr. M.S. (Matthijs) Berends
7ebc534ccd
(v1.5.0.9003) verbose output of mdro()
2021-01-15 22:44:52 +01:00
dr. M.S. (Matthijs) Berends
d014955ce0
(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
2021-01-12 22:08:04 +01:00
