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mirror of https://github.com/msberends/AMR.git synced 2024-12-26 20:06:11 +01:00
Commit Graph

172 Commits

Author SHA1 Message Date
1ca40e8d67 (v2.1.1.9079) fix for uti in as.sir() 2024-09-24 15:34:12 +02:00
4ffac7e22d (v2.1.1.9051) fix VGS mo code 2024-06-16 11:28:56 +02:00
3179216c81 (v2.1.1.9047) unit test and index 2024-06-13 07:37:53 +02:00
cd1b37ff69 (v2.1.1.9046) unit test fix 2024-06-12 14:37:44 +02:00
c753afcd76 (v2.1.1.9045) fix host in animal guidelines 2024-06-12 10:32:43 +02:00
3a54711dfe (v2.1.1.9044) update website 2024-06-10 15:10:54 +02:00
c5981cdeb3 fix unit test 2024-06-04 20:17:54 +02:00
08a27922a8 new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
46634bfcaa navbar colour 2024-02-25 16:48:04 +01:00
8d077149fa new logo 2024-02-25 14:20:43 +01:00
Dr. Matthijs Berends
f065945d7b
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
7ad8635994 documentation for 'data.table' AB selectors 2023-03-11 16:54:02 +01:00
4416394e10 website update 2023-02-26 21:26:58 +01:00
551aaf6517 auto-remove missing ABs in antibiogram() 2023-02-22 16:00:52 +01:00
ba255ddb00 website 2023-02-18 11:57:17 +01:00
714a048fa9 italicise antibiogram 2023-02-17 09:42:51 +01:00
ef716f6ee3 doc fix 2023-02-15 17:16:40 +01:00
c740967cf2 fix for binding rows 2023-02-12 11:20:14 +01:00
b146de6d7f fix for bind_rows2, added 4 langs 2023-02-11 21:57:12 +01:00
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
ca79068604 Fix for adding MO's 2023-01-14 17:10:10 +01:00
e493248ea5 unit test and news file 2022-12-21 09:12:53 +01:00
6f4bb603ec unit tests 2022-12-20 22:18:50 +01:00
5f3a7694aa microorganisms update, added Salmonella groups 2022-12-16 16:10:43 +01:00
8da2467209 updated taxonomy 2022-12-12 00:14:56 +01:00
eed1c14b96 website update 2022-12-11 11:44:29 +01:00
7ca44fb756 cleanup and new intro logo 2022-11-13 13:44:25 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support (#77) 2022-11-13 08:46:10 +01:00
c2801ba7a1 new rsi_translation 2022-10-22 22:00:15 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
fbd5d32541 small fixes 2022-08-29 09:35:36 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
859224e9d0 (v1.8.1.9006) added EUCAST 2022 and CLSI 2022 2022-05-10 21:34:30 +02:00
4754848e96 (v1.8.1.9001) update unit tests, fixes #53 2022-04-08 11:02:45 +02:00
0fb9a1b194 prerelease 1.8.1 2022-03-14 16:43:15 +01:00
be792cc9eb (v1.8.0.9000) unit tests for R 3.3 2022-02-01 17:08:10 +01:00
0cbf8f48b6 (v1.7.1.9071) rsi disk fix 2021-12-13 11:57:34 +01:00
578e7dfee9 (v1.7.1.9070) Better WHONET support 2021-12-13 10:18:28 +01:00
f90e27c1b0 (v1.7.1.9069) CLSI 2021 support 2021-12-12 11:36:58 +01:00
1e66a3daf3 (v1.7.1.9068) new logo, unit tests 2021-12-12 11:07:02 +01:00
56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
77ba4318ea (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00
e18c49ed93 (v1.7.1.9063) not_intrinsic_resistant 2021-12-09 10:48:25 +01:00
e63defe324 (v1.7.1.9062) website update 2021-12-06 11:12:30 +01:00
c8698347cb (v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers 2021-11-29 10:38:38 +01:00
694cf5ba77 (v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup 2021-11-28 23:01:26 +01:00
37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00