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Commit Graph

50 Commits

Author SHA1 Message Date
980be2b22d (v0.7.0.9009) global note 2019-06-13 16:40:35 +02:00
699e87ab4a (v0.7.0.9007) renamed notes fix 2019-06-12 16:08:20 +02:00
bbf8b611e3 doc fix 2019-05-23 17:35:58 +02:00
68cc7ef0d0 new antibiotics 2019-05-10 16:44:59 +02:00
fbc9191b13 new EUCAST rules algorithm 2019-04-05 18:47:39 +02:00
713290a9a6 v0.6.1 2019-03-28 22:05:03 +01:00
afd12d5486 ci fixes 2019-03-26 14:42:56 +01:00
29f444543d added Becker 2019 2019-03-26 14:24:03 +01:00
c6a12266e7 DSMZ data 2019-03-18 14:29:41 +01:00
b561de462a global var 2019-03-15 20:15:56 +01:00
cf3bdb54c7 global var fix 2019-02-27 19:02:47 +01:00
95c49fdf79 global var fix 2019-02-27 17:39:39 +01:00
fb1fc3686c Catalogue of life 2019-02-20 00:04:48 +01:00
e6489483c7 website update 2019-01-29 20:38:45 +01:00
46dcc7e2e8 set_mo_source 2019-01-21 15:53:01 +01:00
c6c3088e9f select() fix for freq 2019-01-17 12:08:04 +01:00
8db87a15e9 fixes 2019-01-15 16:38:54 +01:00
6652f7d82b fix warnings 2019-01-04 09:49:42 +01:00
6b2d464f8c big website update, licence txt update 2019-01-02 23:24:07 +01:00
b937662a97 limits for scale_y_percent - Licence update 2018-12-16 22:45:12 +01:00
9ddf6dc530 support A. species for as.mo, cleanup 2018-11-24 20:25:09 +01:00
83c7da85ab unit tests 2018-11-16 22:28:55 +01:00
9cd4ab928a speed improvement as.mo, freq title 2018-10-31 12:10:49 +01:00
707aa20a37 fixes 2018-10-23 14:59:36 +02:00
ed17db0263 renamed year columns to ref 2018-10-01 14:44:40 +02:00
3119a221e5 authors from ITIS, diff for freq 2018-10-01 11:39:43 +02:00
2b0080995e speed improvement for as.mo, more old taxonomic names 2018-09-27 23:23:48 +02:00
9c566585b0 first inclusion of ITIS data 2018-09-24 23:33:29 +02:00
db14781593 add labels_rsi_count 2018-09-16 22:11:17 +02:00
b792a2754e added prevalence column and alterted as.mo algorith to use it, added ab_name as alias 2018-09-16 16:43:29 +02:00
75fe4d401f new MOs, cleanup 2018-09-01 21:19:46 +02:00
2acdb1981c atc and bactid functions, readme update 2018-08-25 22:01:14 +02:00
3e87c8f409 count_* functions 2018-08-22 00:02:26 +02:00
1ba7d883fe new ggplot enhancement 2018-08-11 21:30:00 +02:00
feab1cad6b small fixes 2018-07-28 09:34:03 +02:00
498e88b5cf improvement for forecasting resistance 2018-07-26 16:30:42 +02:00
6eaf33baf3 speed improvements 2018-07-15 22:56:41 +02:00
e3e10c2e88 fix for macOS and older tidyr versions 2018-07-11 12:34:02 +02:00
f63414d519 new g.test, extra unit tests 2018-07-10 12:27:07 +02:00
fc30d3fb13 freq: support for table 2018-07-09 14:02:58 +02:00
14b990d769 kurtosis, skewness, start with ML 2018-07-08 22:14:55 +02:00
34ee0247ac addins and small improvements to microorganisms dataset 2018-07-04 17:20:03 +02:00
3527894b49 new g.test() and edited freq() 2018-07-01 21:40:37 +02:00
a9bd5472d0 top_freq 2018-06-20 14:47:37 +02:00
uscloud
dcc26dd942 Update freq function 2018-05-22 16:34:22 +02:00
970e3ed7f1 EUCAST rules for MDRO 2018-04-25 15:33:58 +02:00
2509e2413d MDRO, freq tables, new print format for tibbles 2018-04-18 12:24:54 +02:00
fe803f7279
use guess_bactid for GLIMS codes 2018-03-19 21:23:21 +01:00
502a44eb25
- Added new function guess_bactid to determine the ID of a microorganism based on genus/species
- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
2018-03-19 12:43:22 +01:00
62304dc23f
first commit 2018-02-21 11:52:31 +01:00