299c5bea43
na freq, removed factors
2018-10-23 09:42:26 +02:00
c2a93b46db
breaks param, tidyr dep change, freq markdown
2018-10-22 12:32:59 +02:00
86b03577a7
fix for as.mo, added also_single_tested
2018-10-19 13:53:31 +02:00
693f64bdbf
new EUCAST rules: clinical breakpoints
2018-10-17 17:32:34 +02:00
d5a41de711
parameter combine_IR
2018-10-16 09:59:31 +02:00
5b5b95a47b
count_all and some fixes
2018-10-12 16:35:18 +02:00
95c9fdc552
CRAN fixes for release 0.4.0
...
https://cran.r-project.org/web/checks/check_results_AMR.html
2018-10-09 13:53:33 +02:00
c7c57f4042
0.4.0, just published on CRAN
2018-10-01 19:36:42 +02:00
3119a221e5
authors from ITIS, diff for freq
2018-10-01 11:39:43 +02:00
768fe17324
removed clipboard functions as it violated CRAN policies
2018-09-28 16:05:18 +02:00
2b0080995e
speed improvement for as.mo, more old taxonomic names
2018-09-27 23:23:48 +02:00
9c566585b0
first inclusion of ITIS data
2018-09-24 23:33:29 +02:00
db14781593
add labels_rsi_count
2018-09-16 22:11:17 +02:00
26f5be0033
support for portuguese, language determination based on system
2018-09-08 16:06:47 +02:00
b388e3fee7
Support for German and Spanish microorganism properties, cleanup
2018-09-04 11:33:30 +02:00
75fe4d401f
new MOs, cleanup
2018-09-01 21:19:46 +02:00
5965d3c794
replaced bactid by mo
2018-08-31 13:36:19 +02:00
029157b3be
163 new trade names, added ab_tradenames
2018-08-29 12:27:37 +02:00
972fc4f6c7
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
2018-08-28 13:51:13 +02:00
2acdb1981c
atc and bactid functions, readme update
2018-08-25 22:01:14 +02:00
a100d07da6
removed ratio, better rsi_calc, update for freq
2018-08-24 11:08:20 +02:00
0c0e538ef4
dependencies
2018-08-23 22:05:17 +02:00
8ab93b6688
unit tests
2018-08-23 01:01:50 +02:00
da5379c881
quasiquotation, alpha for geom_rsi
2018-08-23 00:40:36 +02:00
3e87c8f409
count_* functions
2018-08-22 00:02:26 +02:00
6bab01948e
v0.3.0
2018-08-14 13:25:24 +02:00
e5193c7749
AppVeyor
2018-08-13 23:05:53 +02:00
dba06c3295
abname improvement, small fixes
2018-08-13 11:00:53 +02:00
e5d32cafe0
new unit tests for ggplot, small fixes
2018-08-12 17:44:06 +02:00
1ba7d883fe
new ggplot enhancement
2018-08-11 21:30:00 +02:00
53fa198e35
new portion functions
2018-08-10 15:01:05 +02:00
ae2433a020
rsi family for resistance analysis
2018-08-03 14:49:29 +02:00
bd9bcfef78
thesis advisors
2018-08-03 09:59:39 +02:00
6262315527
Becker classification
...
Lancefield classification
Added Lancefield groups to `microorganisms` data set
2018-08-02 13:15:45 +02:00
edd2dd09dc
rsi for freq
2018-08-01 22:37:28 +02:00
211e3bae14
remove reshape2 dependency
2018-07-30 01:18:40 +02:00
feab1cad6b
small fixes
2018-07-28 09:34:03 +02:00
498e88b5cf
improvement for forecasting resistance
2018-07-26 16:30:42 +02:00
d9e204031d
update to septic_patients, speed improvements
2018-07-25 14:17:04 +02:00
8421638b60
new class bactid
2018-07-23 14:14:03 +02:00
9920ac8a5c
fix for keyab, more examples
2018-07-23 10:35:39 +02:00
ad662d7bab
new col names for key_antibiotics
2018-07-19 15:11:23 +02:00
5cb9c541f8
new algorithm key abs
2018-07-17 13:02:05 +02:00
a5a4354651
speed improvements
2018-07-17 10:32:26 +02:00
715a7630ca
support format.freq
2018-07-16 16:41:48 +02:00
6eaf33baf3
speed improvements
2018-07-15 22:56:41 +02:00
8240959f38
support older mac release
2018-07-13 19:40:50 +02:00
b6655f6454
Welcome C++!
2018-07-13 17:23:46 +02:00
a28289562a
remove print function, out of scope
2018-07-11 20:12:19 +02:00
e3e10c2e88
fix for macOS and older tidyr versions
2018-07-11 12:34:02 +02:00
eca406b18b
travis build fails for macos
2018-07-11 11:46:06 +02:00
f63414d519
new g.test, extra unit tests
2018-07-10 12:27:07 +02:00
fc30d3fb13
freq: support for table
2018-07-09 14:02:58 +02:00
14b990d769
kurtosis, skewness, start with ML
2018-07-08 22:14:55 +02:00
34ee0247ac
addins and small improvements to microorganisms dataset
2018-07-04 17:20:03 +02:00
2ca01e2d8d
remove rlang dependency
2018-07-01 22:23:34 +02:00
965fe8681b
rlang dep for Travis/macOS
2018-07-01 21:50:34 +02:00
3527894b49
new g.test() and edited freq()
2018-07-01 21:40:37 +02:00
6ee713cec1
move tbl_parse_guess
2018-06-29 08:56:03 +02:00
649a8025aa
add clipboard functions again
2018-06-27 15:54:56 +02:00
a9bd5472d0
top_freq
2018-06-20 14:47:37 +02:00
bdc860e29c
atc_groups
2018-06-19 10:05:38 +02:00
0a5898b17d
fix for printing tibbles, improve guess_bactid
2018-06-08 12:06:54 +02:00
efdf5a3dc5
prevent dplyr:row_number warning
2018-05-31 14:19:25 +02:00
5593aee19e
edit as.rsi algor.
2018-05-30 23:02:16 +02:00
uscloud
dcc26dd942
Update freq function
2018-05-22 16:34:22 +02:00
f05e7178cb
added vignette of freq
2018-05-09 11:44:46 +02:00
c0fc82c794
Added function n_rsi
2018-05-02 14:56:25 +02:00
8fe70d5652
Fix Latex PDF error
2018-04-30 16:24:11 +02:00
970e3ed7f1
EUCAST rules for MDRO
2018-04-25 15:33:58 +02:00
82fec5cc51
Try to support older R versions
2018-04-19 14:10:57 +02:00
e7396b8f39
Try to support older R versions
2018-04-19 12:50:23 +02:00
a814d82b4b
try to support older R versions
2018-04-18 14:50:16 +02:00
2509e2413d
MDRO, freq tables, new print format for tibbles
2018-04-18 12:24:54 +02:00
972e923484
testthat for macOS
2018-04-02 16:21:03 +02:00
07bdd61241
update dependencies
2018-04-02 16:05:09 +02:00
c182a9673d
fix clipboard on linux
2018-04-02 11:11:21 +02:00
1b3cc41c08
fix tests
2018-03-27 17:58:46 +02:00
6f7730dcaa
add tests using testthat
2018-03-27 17:43:42 +02:00
53464ff1c8
- For functions first_isolate, EUCAST_rules the antibiotic column names are case-insensitive
...
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
502a44eb25
- Added new function guess_bactid to determine the ID of a microorganism based on genus/species
...
- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
2018-03-19 12:43:22 +01:00
0fec64a240
Add ORCID identifier
2018-03-19 10:28:35 +01:00
04fc3573ec
add barplots
2018-03-13 14:34:10 +01:00
be51a95448
rename columns
2018-02-26 10:53:54 +01:00
3f859210d5
new date for push test
2018-02-22 22:04:22 +01:00
d8da8daf9a
First CRAN submission edits
2018-02-22 20:48:48 +01:00
62304dc23f
first commit
2018-02-21 11:52:31 +01:00
