dr. M.S. (Matthijs) Berends
1a0dc4bf46
revert back to pre-antibiogram
2023-02-09 13:07:39 +01:00
dr. M.S. (Matthijs) Berends
aa48c6bf53
pm fixes
2023-02-08 16:51:41 +01:00
dr. M.S. (Matthijs) Berends
822e9de82c
pm update, unit test fix?
2023-02-08 13:48:06 +01:00
dr. M.S. (Matthijs) Berends
4a54d59f70
tinytest
2023-02-06 14:36:31 +01:00
dr. M.S. (Matthijs) Berends
75a4c1ef3e
fixes2
2023-02-06 14:34:38 +01:00
dr. M.S. (Matthijs) Berends
f7dd890b79
fixes
2023-02-06 12:38:52 +01:00
dr. M.S. (Matthijs) Berends
9e99e66f01
use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
dr. M.S. (Matthijs) Berends
4b133d4c96
unit tests
2023-01-30 17:24:03 +01:00
dr. M.S. (Matthijs) Berends
89a577805f
prelim fix for g.test
2023-01-30 12:26:48 +01:00
dr. M.S. (Matthijs) Berends
126afb01a4
unit tests 2
2023-01-24 16:31:00 +01:00
dr. M.S. (Matthijs) Berends
c0d8888ab7
unit tests
2023-01-24 16:09:48 +01:00
dr. M.S. (Matthijs) Berends
7b00b4f34a
unit tests
2023-01-24 14:52:15 +01:00
dr. M.S. (Matthijs) Berends
830c67f1bf
documentation, unit tests
2023-01-24 10:20:27 +01:00
dr. M.S. (Matthijs) Berends
eef00069fd
add all options to documentation
2023-01-23 20:07:57 +01:00
dr. M.S. (Matthijs) Berends
19fd0ef121
sort sir history
2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR
2023-01-21 23:47:20 +01:00
dr. M.S. (Matthijs) Berends
24b12024ce
unit test fix
2023-01-20 09:45:03 +01:00
dr. M.S. (Matthijs) Berends
593d740b84
documentation, file permissions
2023-01-19 12:54:53 +01:00
dr. M.S. (Matthijs) Berends
b94bc6c67b
adding mo fixes
2023-01-14 19:50:25 +01:00
dr. M.S. (Matthijs) Berends
ca79068604
Fix for adding MO's
2023-01-14 17:10:10 +01:00
dr. M.S. (Matthijs) Berends
33f269e2f4
contrib update
2023-01-12 23:16:05 +01:00
dr. M.S. (Matthijs) Berends
51906d6f97
no overwriting taxonomy when adding microorganisms
2023-01-12 11:33:28 +01:00
dr. M.S. (Matthijs) Berends
1029aa2fdc
algorithm improvement
2023-01-07 14:53:14 +01:00
dr. M.S. (Matthijs) Berends
08fe5a88c0
documentation
2023-01-07 01:54:46 +01:00
dr. M.S. (Matthijs) Berends
2375bfdcb5
documentation
2023-01-07 01:51:19 +01:00
dr. M.S. (Matthijs) Berends
84ed8c32bb
documentation
2023-01-06 19:21:04 +01:00
dr. M.S. (Matthijs) Berends
cf16bc7de1
unit tests
2023-01-06 13:45:20 +01:00
dr. M.S. (Matthijs) Berends
86e28bafce
add mo_pathogenicity
2023-01-06 13:35:37 +01:00
dr. M.S. (Matthijs) Berends
4801a6067e
unit tests
2023-01-06 11:22:02 +01:00
dr. M.S. (Matthijs) Berends
8a0a0d4682
unit tests
2023-01-06 10:08:25 +01:00
dr. M.S. (Matthijs) Berends
268ec31d92
unit tests
2023-01-05 18:21:48 +01:00
dr. M.S. (Matthijs) Berends
5361c0b2a0
limit GitHub runners
2023-01-05 15:41:07 +01:00
dr. M.S. (Matthijs) Berends
51c0f0814e
new setup unit tests
2023-01-05 15:03:18 +01:00
dr. M.S. (Matthijs) Berends
a98d0d75ea
styler dep
2023-01-05 14:46:44 +01:00
dr. M.S. (Matthijs) Berends
a0ee86536a
unit tests
2023-01-05 14:43:18 +01:00
dr. M.S. (Matthijs) Berends
77d9cf1936
documentation
2022-12-30 13:02:37 +01:00
dr. M.S. (Matthijs) Berends
e4ea96cbf9
fix for R < 3.4
2022-12-30 12:57:27 +01:00
dr. M.S. (Matthijs) Berends
1db74e86cd
good start-up practice
2022-12-29 16:23:57 +01:00
dr. M.S. (Matthijs) Berends
61c0bdb7af
documentation
2022-12-28 15:04:59 +01:00
dr. M.S. (Matthijs) Berends
ba3b237bdf
custom mo update
2022-12-28 14:20:10 +01:00
dr. M.S. (Matthijs) Berends
fe09e9252b
custom mo update
2022-12-27 16:03:03 +01:00
dr. M.S. (Matthijs) Berends
f619fb683b
support new mo codes
2022-12-27 15:16:15 +01:00
dr. M.S. (Matthijs) Berends
e493248ea5
unit test and news file
2022-12-21 09:12:53 +01:00
dr. M.S. (Matthijs) Berends
4c42a43f7d
fixes
2022-12-20 22:41:39 +01:00
dr. M.S. (Matthijs) Berends
6f4bb603ec
unit tests
2022-12-20 22:18:50 +01:00
dr. M.S. (Matthijs) Berends
f0a2cdbf5e
update mo algorithm
2022-12-20 16:14:04 +01:00
dr. M.S. (Matthijs) Berends
b1b7534c78
incorporate Bartlett et al (2022)
2022-12-19 15:32:41 +01:00
dr. M.S. (Matthijs) Berends
23fe427cbc
Fixes for Salmonella
2022-12-17 14:31:33 +01:00
dr. M.S. (Matthijs) Berends
5f3a7694aa
microorganisms update, added Salmonella groups
2022-12-16 16:10:43 +01:00
dr. M.S. (Matthijs) Berends
8da2467209
updated taxonomy
2022-12-12 00:14:56 +01:00
