dr. M.S. (Matthijs) Berends
7c3320b967
update reproduction scripts links
2025-04-13 10:02:47 +02:00
dr. M.S. (Matthijs) Berends
d31371613e
(v2.1.1.9237) clean-up
2025-04-13 09:59:40 +02:00
dr. M.S. (Matthijs) Berends
40d7a971c3
(v2.1.1.9236) documentation
2025-04-12 11:46:42 +02:00
dr. M.S. (Matthijs) Berends
36fd99e1f4
(v2.1.1.9235) New website!
2025-04-08 15:54:30 +01:00
dr. M.S. (Matthijs) Berends
a905303296
(v2.1.1.9234) fix CLSI
2025-04-07 17:36:01 +01:00
dr. M.S. (Matthijs) Berends
1fdab84103
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
dr. M.S. (Matthijs) Berends
63099cd81e
(v2.1.1.9232) is.mic() iteration, documentation cleanup
2025-03-31 10:51:31 +02:00
dr. M.S. (Matthijs) Berends
5f5b77bfaf
(v2.1.1.9231) Update EUCAST vignette
2025-03-29 18:03:31 +01:00
dr. M.S. (Matthijs) Berends
b972bbb96f
(v2.1.1.9230) deprecated resistance_predict(), data set folder name without space
2025-03-28 16:48:56 +01:00
dr. M.S. (Matthijs) Berends
bd873ac1bc
(v2.1.1.9229) unit tests
2025-03-28 11:40:09 +01:00
dr. M.S. (Matthijs) Berends
49da312506
(v2.1.1.9228) repo cleaning
2025-03-28 11:17:49 +01:00
dr. M.S. (Matthijs) Berends
d77ad6bd6e
(v2.1.1.9227) unit test fixes
2025-03-27 15:36:27 +01:00
dr. M.S. (Matthijs) Berends
969a42cc8c
(v2.1.1.9226) update intrinsic_resistant, unit test fixes
2025-03-27 15:20:22 +01:00
dr. M.S. (Matthijs) Berends
e6f88241b2
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
dr. M.S. (Matthijs) Berends
8deaf2c8eb
(v2.1.1.9224) skip tests on cran
2025-03-20 23:29:21 +01:00
dr. M.S. (Matthijs) Berends
bb110646db
(v2.1.1.9223) allow + ab
2025-03-20 22:56:32 +01:00
dr. M.S. (Matthijs) Berends
d147d6602d
(v2.1.1.9222) python bump
2025-03-20 22:02:44 +01:00
dr. M.S. (Matthijs) Berends
43660f2b18
(v2.1.1.9221) allow combined numeric MIC values
2025-03-20 21:47:45 +01:00
dr. M.S. (Matthijs) Berends
79f56ad8a4
(v2.1.1.9220) unit test
2025-03-19 16:13:43 +01:00
dr. M.S. (Matthijs) Berends
755e6f43b7
(v2.1.1.9219) unit tests
2025-03-19 16:06:23 +01:00
dr. M.S. (Matthijs) Berends
287e361a54
(v2.1.1.9218) Fix unit tests
2025-03-19 16:05:24 +01:00
dr. M.S. (Matthijs) Berends
4dc4398ad1
(v2.1.1.9217) allow + in amr selectors
2025-03-18 16:35:22 +01:00
dr. M.S. (Matthijs) Berends
8d8444c607
(v2.1.1.9216) PyPI access token
2025-03-17 08:56:27 +01:00
dr. M.S. (Matthijs) Berends
1f35ff2b0b
(v2.1.1.9215) python token
2025-03-16 18:50:37 +01:00
dr. M.S. (Matthijs) Berends
a092eb3ce3
(v2.1.1.9214) aaaaaand another attempt
2025-03-16 14:03:40 +01:00
dr. M.S. (Matthijs) Berends
c614d66495
(v2.1.1.9213) snapshots
2025-03-16 13:41:08 +01:00
dr. M.S. (Matthijs) Berends
7a39439fa9
(v2.1.1.9212) unit tests
2025-03-16 13:25:54 +01:00
dr. M.S. (Matthijs) Berends
98bc83da73
(v2.1.1.9211) fix python wrapper
2025-03-16 13:11:26 +01:00
dr. M.S. (Matthijs) Berends
ceb3e6675d
(v2.1.1.9210) unit tsts
2025-03-15 20:58:05 +01:00
dr. M.S. (Matthijs) Berends
5c11b924de
(v2.1.1.9209) unit tests
2025-03-15 20:46:33 +01:00
dr. M.S. (Matthijs) Berends
6bdc798734
(v2.1.1.9208) unit tests
2025-03-15 20:30:29 +01:00
dr. M.S. (Matthijs) Berends
d717bd3f87
(v2.1.1.9207) fix PythonPackage
2025-03-15 16:19:03 +01:00
dr. M.S. (Matthijs) Berends
7631e82ae6
(v2.1.1.9206) update precommit hook
2025-03-15 16:17:27 +01:00
dr. M.S. (Matthijs) Berends
ede1cdfd99
(v2.1.1.9205) Fix python wrapper
2025-03-15 16:14:29 +01:00
dr. M.S. (Matthijs) Berends
afb97ad38f
(v2.1.1.9204) move python package to separate branch
2025-03-15 16:02:57 +01:00
dr. M.S. (Matthijs) Berends
7f1ae1f474
(v2.1.1.9203) unit tests
2025-03-15 13:25:23 +01:00
dr. M.S. (Matthijs) Berends
f758ab60f3
run MICs and disks if detected
2025-03-14 17:23:24 +01:00
dr. M.S. (Matthijs) Berends
6cc273bbc7
(v2.1.1.9201) oops
2025-03-14 17:12:12 +01:00
dr. M.S. (Matthijs) Berends
72f2e723fb
(v2.1.1.9200) new argument capped_mic_handling, add Search to website
2025-03-14 17:01:50 +01:00
dr. M.S. (Matthijs) Berends
58d7aa8790
(v2.1.1.9199) fix eucast
2025-03-14 13:43:22 +01:00
dr. M.S. (Matthijs) Berends
e134e01418
(v2.1.1.9198) support eucast expert rules 14 and 13.1
2025-03-14 10:10:35 +01:00
dr. M.S. (Matthijs) Berends
eafe9bd113
(v2.1.1.9197) Final fixes for vetmed
2025-03-13 15:51:58 +01:00
dr. M.S. (Matthijs) Berends
861331b1df
(v2.1.1.9196) fix eucast, unit tests
2025-03-13 15:38:39 +01:00
dr. M.S. (Matthijs) Berends
9aab129ea6
(v2.1.1.9195) add BTL-S, fix ranks in unknown microorganisms
2025-03-13 14:30:14 +01:00
dr. M.S. (Matthijs) Berends
a7ef22a21e
(v2.1.1.9194) new argument for missing R breakpoints - updated from WHONET
2025-03-12 16:24:38 +01:00
dr. M.S. (Matthijs) Berends
e1b7252ff6
(v2.1.1.9193) new antimicrobials for screening
2025-03-12 15:09:28 +01:00
dr. M.S. (Matthijs) Berends
067a8aca66
(v2.1.1.9192) fix fluoroquinolones and add bleomycin
2025-03-10 17:04:35 +01:00
dr. M.S. (Matthijs) Berends
32024e597a
(v2.1.1.9191) unit tests
2025-03-10 12:16:45 +01:00
dr. M.S. (Matthijs) Berends
a2c2be23c1
(v2.1.1.9190) antibiotics deprecation in antibiogram()
2025-03-09 10:41:11 +01:00
dr. M.S. (Matthijs) Berends
c7af397edf
(v2.1.1.9189) Add the awesome Aislinn Cook
2025-03-07 23:25:50 +01:00
dr. M.S. (Matthijs) Berends
245483e41c
(v2.1.1.9188) fix antibiogram plot
2025-03-07 23:01:25 +01:00
dr. M.S. (Matthijs) Berends
b67613ce08
(v2.1.1.9187) WISCA fix
2025-03-07 22:27:21 +01:00
dr. M.S. (Matthijs) Berends
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
dr. M.S. (Matthijs) Berends
f2b2a450cb
issue template
2025-03-03 19:36:26 +01:00
dr. M.S. (Matthijs) Berends
ca435216d4
issue template
2025-03-03 19:32:35 +01:00
dr. M.S. (Matthijs) Berends
e28dd86c43
(v2.1.1.9183) unit test for older R versions
2025-03-03 14:54:42 +01:00
dr. M.S. (Matthijs) Berends
9a9468fa84
(v2.1.1.9182) fix AMR selectors for tidymodels, add unit tests
2025-03-03 12:59:27 +01:00
dr. M.S. (Matthijs) Berends
fa519105eb
lintr fix
2025-02-27 16:44:56 +01:00
dr. M.S. (Matthijs) Berends
07efc292bc
(v2.1.1.9163) cleanup
2025-02-27 14:04:29 +01:00
dr. M.S. (Matthijs) Berends
1a43882583
ab fix
2025-02-26 21:34:07 +01:00
dr. M.S. (Matthijs) Berends
22e66741cc
(v2.1.1.9160) cleanup
2025-02-26 20:28:33 +01:00
dr. M.S. (Matthijs) Berends
0c3ea4b538
(v2.1.1.9159) new approach as.ab()
2025-02-26 19:23:54 +01:00
dr. M.S. (Matthijs) Berends
122bca0f95
(v2.1.1.9158) updated as.ab
2025-02-26 13:32:16 +01:00
dr. M.S. (Matthijs) Berends
195dfb4b91
(v2.1.1.9157) improved as.ab(), fixed knit_print of antibiogram
2025-02-26 13:27:20 +01:00
dr. M.S. (Matthijs) Berends
b10989f431
(v2.1.1.9156) fix for knitr in WISCA
2025-02-23 19:18:42 +01:00
dr. M.S. (Matthijs) Berends
aa8f6af185
(v2.1.1.9155) new mic_p50() and mic_p90() - updated AMR intro
2025-02-23 11:18:08 +01:00
dr. M.S. (Matthijs) Berends
226d10f546
(v2.1.1.9154) documentation fix
2025-02-22 22:07:56 +01:00
dr. M.S. (Matthijs) Berends
abb5602532
(v2.1.1.9153) mic plot fix
2025-02-22 21:26:38 +01:00
dr. M.S. (Matthijs) Berends
671d657fd8
(v2.1.1.9152) MIC plot fix
2025-02-18 08:07:02 +01:00
dr. M.S. (Matthijs) Berends
ef02f4a7f2
(v2.1.1.9151) update readme
2025-02-15 20:53:12 +01:00
dr. M.S. (Matthijs) Berends
9650545d6e
(v2.1.1.9150) unit tests
2025-02-15 13:40:51 +01:00
dr. M.S. (Matthijs) Berends
883fbe7cfe
(v2.1.1.9149) doc fix
2025-02-15 12:46:48 +01:00
dr. M.S. (Matthijs) Berends
9d636983ac
(v2.1.1.9148) scale fix, antibiogram fix
2025-02-15 12:38:29 +01:00
dr. M.S. (Matthijs) Berends
d94efb0f5e
(v2.1.1.9147) scale fixes and WISCA update, fix conserved capped values
2025-02-14 14:16:46 +01:00
dr. M.S. (Matthijs) Berends
bd2887bcd4
(v2.1.1.9146) new scale_*_sir() functions
2025-02-13 19:47:57 +01:00
dr. M.S. (Matthijs) Berends
07757c933c
(v2.1.1.9144) new MIC scales and fix for rescale_mic()
2025-02-11 08:48:37 +01:00
dr. M.S. (Matthijs) Berends
2171f05951
(v2.1.1.9143) unit tests
2025-02-07 19:18:55 +01:00
dr. M.S. (Matthijs) Berends
cc2bb151ab
(v2.1.1.9142) unit test fix
2025-02-07 19:03:02 +01:00
dr. M.S. (Matthijs) Berends
8ba2e4ed94
(v2.1.1.9141) new AMR selectors, eucast overwrite arg
2025-02-07 18:01:22 +01:00
dr. M.S. (Matthijs) Berends
baea4323c7
(v2.1.1.9140) WISCA fix
2025-02-05 20:48:35 +01:00
dr. M.S. (Matthijs) Berends
d84033bbcb
(v2.1.1.9139) unit test
2025-02-01 11:10:42 +01:00
dr. M.S. (Matthijs) Berends
6a206bed12
(v2.1.1.9138) unit tests
2025-01-31 23:06:45 +01:00
dr. M.S. (Matthijs) Berends
ecc4e25e75
(v2.1.1.9137) examples fix
2025-01-31 16:28:06 +01:00
dr. M.S. (Matthijs) Berends
22afd918e6
(v2.1.1.9136) console colours, updated Suggests, added as.ab() improvement
2025-01-31 16:01:52 +01:00
dr. M.S. (Matthijs) Berends
700522b466
(v2.1.1.9135) documentation fix
2025-01-28 15:16:55 +01:00
dr. M.S. (Matthijs) Berends
e740aa691b
(v2.1.1.9134) add Gamma to WISCA documentation
2025-01-27 23:11:10 +01:00
dr. M.S. (Matthijs) Berends
2561494e06
(v2.1.1.9133) update math formulae
2025-01-27 22:43:35 +01:00
dr. M.S. (Matthijs) Berends
9520977a10
(v2.1.1.9133) (v2.1.1.9132) unit test, final fixes
2025-01-27 22:09:16 +01:00
dr. M.S. (Matthijs) Berends
f03933940c
(v2.1.1.9131) implement testthat
2025-01-27 21:43:10 +01:00
dr. M.S. (Matthijs) Berends
92166c16e8
fix2
2025-01-27 16:34:26 +01:00
dr. M.S. (Matthijs) Berends
1149360b27
(v2.1.1.9129) unit test fix
2025-01-27 16:17:03 +01:00
dr. M.S. (Matthijs) Berends
6efa317a81
(v2.1.1.9128) fix for bug-drug combinations
2025-01-27 11:51:40 +01:00
dr. M.S. (Matthijs) Berends
7accf6ff13
(v2.1.1.9127) unit tests
2025-01-27 10:46:43 +01:00
dr. M.S. (Matthijs) Berends
66833b4f5a
(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper
2025-01-26 23:01:17 +01:00
dr. M.S. (Matthijs) Berends
92c4fc0f94
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'
2025-01-17 12:09:39 +01:00
dr. M.S. (Matthijs) Berends
08ddbaa930
(v2.1.1.9123) add EFF code to antibiotics data set
2025-01-15 16:14:09 +01:00
dr. M.S. (Matthijs) Berends
2e31ec19c3
(v2.1.1.9122) fix documentation
2024-12-20 10:52:44 +01:00
dr. M.S. (Matthijs) Berends
15fc72fc66
(v2.1.1.9121) support tidymodels
2024-12-19 20:17:15 +01:00
dr. M.S. (Matthijs) Berends
8249cfda46
(v2.1.1.9120) unit test fix
2024-12-15 20:32:55 +01:00
dr. M.S. (Matthijs) Berends
7e7db6bb81
support for Dutch national MDR guideline
2024-12-15 20:15:52 +01:00
