Commit Graph

34 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 7a4628b73f Added C. freundii complex and Y. pseudotuberculosis complex 2023-07-14 10:49:06 +02:00
dr. M.S. (Matthijs) Berends acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
dr. M.S. (Matthijs) Berends 2d97cca6d9 fix `reference_df` endless loop 2023-06-26 13:52:02 +02:00
dr. M.S. (Matthijs) Berends 91fa73dedf add oxygen tolerance 2023-05-11 21:56:27 +02:00
dr. M.S. (Matthijs) Berends 9148a2dcf4 fix `mo_rank()` for 'unknown' MOs 2023-04-20 15:20:41 +02:00
dr. M.S. (Matthijs) Berends ed70f95380 Fix clinical breakpoints 2023-04-14 23:14:34 +02:00
dr. M.S. (Matthijs) Berends 147f9112e9 Fix some WHONET codes 2023-04-14 11:12:26 +02:00
dr. M.S. (Matthijs) Berends 4416394e10 website update 2023-02-26 21:26:58 +01:00
dr. M.S. (Matthijs) Berends 9e99e66f01 use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
Dr. Matthijs Berends 98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
dr. M.S. (Matthijs) Berends f0a2cdbf5e update mo algorithm 2022-12-20 16:14:04 +01:00
dr. M.S. (Matthijs) Berends b1b7534c78 incorporate Bartlett et al (2022) 2022-12-19 15:32:41 +01:00
dr. M.S. (Matthijs) Berends 23fe427cbc Fixes for Salmonella 2022-12-17 14:31:33 +01:00
dr. M.S. (Matthijs) Berends 5f3a7694aa microorganisms update, added Salmonella groups 2022-12-16 16:10:43 +01:00
dr. M.S. (Matthijs) Berends 8da2467209 updated taxonomy 2022-12-12 00:14:56 +01:00
dr. M.S. (Matthijs) Berends 56dad34e68 update prevalence with new phyla 2022-12-09 13:37:08 +01:00
dr. M.S. (Matthijs) Berends afdc48db1e fix txt export of microorganisms 2022-10-29 16:08:18 +02:00
Dr. Matthijs Berends cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
dr. M.S. (Matthijs) Berends 3f2f60ab77 language updates 2022-08-19 12:33:14 +02:00
dr. M.S. (Matthijs) Berends 7f981e7778 (v1.8.1.9013) add Toxoplasma 2022-06-10 13:15:23 +02:00
dr. M.S. (Matthijs) Berends b84d647cac (v1.8.1.9012) update prevalence of some genera 2022-06-03 13:28:55 +02:00
dr. M.S. (Matthijs) Berends 5375f75829 (v1.7.1.9056) unit tests 2021-11-29 11:55:18 +01:00
dr. M.S. (Matthijs) Berends c8698347cb (v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers 2021-11-29 10:38:38 +01:00
dr. M.S. (Matthijs) Berends 37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00
dr. M.S. (Matthijs) Berends 4e0a9533ad (v1.5.0.9041) SNOMED update 2021-03-11 21:42:30 +01:00
dr. M.S. (Matthijs) Berends 0d29bde693 (v1.5.0.9030) as.ab() speed improvement 2021-03-05 10:32:09 +01:00
dr. M.S. (Matthijs) Berends 0e0e3c4ffa (v1.5.0.9029) added missing families and orders 2021-03-05 01:31:46 +01:00
dr. M.S. (Matthijs) Berends ddf88345f1 (v1.5.0.9028) Updated taxonomy until March 2021 2021-03-04 23:28:32 +01:00
dr. M.S. (Matthijs) Berends 09fba38ea6 (v1.2.0.9035) as.mo() speed improvement 2020-07-22 10:24:23 +02:00
dr. M.S. (Matthijs) Berends 76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
dr. M.S. (Matthijs) Berends d9a4b0bcaf (v1.1.0.9021) 1st isolates update 2020-05-28 10:51:56 +02:00
dr. M.S. (Matthijs) Berends 86d44054f0 (v1.1.0.9020) updated taxonomy 2020-05-27 16:37:49 +02:00
dr. M.S. (Matthijs) Berends c7a76ba713 (v0.9.0.9020) as.mo() improvement 2020-02-09 22:04:29 +01:00
dr. M.S. (Matthijs) Berends 4e1c16c5a5 (v0.9.0.9019) website update 2020-02-01 15:09:36 +01:00